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raise an error if more than 20% of the reads get assigned to Undetermined #109

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antgonza opened this issue Apr 17, 2025 · 0 comments
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@antgonza
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bcl-convert log outlines the total reads and how many were Undetermined:

Lane 4 Post-run Information:
Total clusters: 3768318494
Total Genomic Reads: 7536636988
Total Genomic Input Gigabases 1138.03
Minimum reads for a sample: 0
Maximum reads for a sample: 106
Average reads per sample: 0.51
Undetermined reads: 7536636792

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