diff --git a/CHANGELOG.md b/CHANGELOG.md index 396f6875d..b4ed3b113 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,5 +1,21 @@ # Qiita changelog +Version 2025.02 +--------------- + +Deployed on February 24th, 2025 + +* Replaced os.rename for shutil.move in the code to fix [#3455](https://github.com/qiita-spots/qiita/issues/3455). +* Via qp-spades, replaced the legacy `spades` command for `cloudSPAdes` for TellSeq. +* `FASTA_preprocessed` within qtp-sequencing now allows for results to be named using their sample-name, extra from run-prefix. +* `Remove SynDNA inserts & plasmid reads` superseded `Remove SynDNA reads`, which now removes SynDna inserts and plasmids. +* `update_resource_allocation_redis` now relies on using equations stored in the database vs. hardcoded; thank you @Gossty! +* SPP: Updated prep-info file generation to identify and report filtered fastq files that could not be matched to a sample-id instead of silently ignoring them. +* SPP: Removed legacy test code and example files for amplicon processing. Some other tests updated and repurposed. +* SPP: jobs are now easier to restart. +* SPP: MultiQC report generation is now a separate slurm job & use jinja2 templates; also FastQC use jinja2 templates. + + Version 2025.01 --------------- diff --git a/qiita_core/__init__.py b/qiita_core/__init__.py index 524a5b98c..041d7f77c 100644 --- a/qiita_core/__init__.py +++ b/qiita_core/__init__.py @@ -6,4 +6,4 @@ # The full license is in the file LICENSE, distributed with this software. # ----------------------------------------------------------------------------- -__version__ = "2025.01" +__version__ = "2025.02" diff --git a/qiita_db/__init__.py b/qiita_db/__init__.py index 9d26f4c20..3d4a06d0d 100644 --- a/qiita_db/__init__.py +++ b/qiita_db/__init__.py @@ -27,7 +27,7 @@ from . import user from . import processing_job -__version__ = "2025.01" +__version__ = "2025.02" __all__ = ["analysis", "artifact", "archive", "base", "commands", "environment_manager", "exceptions", "investigation", "logger", diff --git a/qiita_pet/__init__.py b/qiita_pet/__init__.py index 524a5b98c..041d7f77c 100644 --- a/qiita_pet/__init__.py +++ b/qiita_pet/__init__.py @@ -6,4 +6,4 @@ # The full license is in the file LICENSE, distributed with this software. # ----------------------------------------------------------------------------- -__version__ = "2025.01" +__version__ = "2025.02" diff --git a/qiita_pet/handlers/api_proxy/__init__.py b/qiita_pet/handlers/api_proxy/__init__.py index 6552aaf1b..2455b6132 100644 --- a/qiita_pet/handlers/api_proxy/__init__.py +++ b/qiita_pet/handlers/api_proxy/__init__.py @@ -38,7 +38,7 @@ from .user import (user_jobs_get_req) from .util import check_access, check_fp -__version__ = "2025.01" +__version__ = "2025.02" __all__ = ['prep_template_summary_get_req', 'data_types_get_req', 'study_get_req', 'sample_template_filepaths_get_req', diff --git a/qiita_ware/__init__.py b/qiita_ware/__init__.py index 524a5b98c..041d7f77c 100644 --- a/qiita_ware/__init__.py +++ b/qiita_ware/__init__.py @@ -6,4 +6,4 @@ # The full license is in the file LICENSE, distributed with this software. # ----------------------------------------------------------------------------- -__version__ = "2025.01" +__version__ = "2025.02" diff --git a/setup.py b/setup.py index d782ead36..b07df6e5f 100644 --- a/setup.py +++ b/setup.py @@ -10,7 +10,7 @@ from setuptools import setup from glob import glob -__version__ = "2025.01" +__version__ = "2025.02" classes = """