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Copy file name to clipboardExpand all lines: CHANGELOG.md
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* Via qp-spades, replaced the legacy `spades` command for `cloudSPAdes` for TellSeq.
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*`FASTA_preprocessed` within qtp-sequencing now allows for results to be named using their sample-name, extra from run-prefix.
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*`Remove SynDNA inserts & plasmid reads` superseded `Remove SynDNA reads`, which now removes SynDna inserts and plasmids.
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*[ToDo] SPP changes.
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*`update_resource_allocation_redis` now relies on using equations stored in the database vs. hardcoded; thank you @Gossty!
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* SPP: Updated prep-info file generation to identify and report filtered fastq files that could not be matched to a sample-id instead of silently ignoring them.
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* SPP: Removed legacy test code and example files for amplicon processing. Some other tests updated and repurposed.
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* SPP: jobs are now easier to restart.
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* SPP: MultiQC report generation is now a separate slurm job & use jinja2 templates; also FastQC use jinja2 templates.
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