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MAINT: Update URLs
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qiita_db/environment_manager.py

Lines changed: 4 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -94,7 +94,7 @@ def _add_ontology_data(conn):
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"To download the file again, delete the existing file first."
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% fp)
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else:
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url = 'ftp://thebeast.colorado.edu/pub/qiita/qiita_ontoandvocab.sql.gz'
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url = 'ftp://ftp.microbio.me/pub/qiita/qiita_ontoandvocab.sql.gz'
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try:
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urlretrieve(url, fp)
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except:
@@ -121,13 +121,13 @@ def _download_reference_files(conn):
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mkdir(reference_base_dir)
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files = {'tree': (get_reference_fp('gg_13_8-97_otus.tree'),
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'ftp://thebeast.colorado.edu/greengenes_release/'
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'ftp://ftp.microbio.me/greengenes_release/'
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'gg_13_8_otus/trees/97_otus.tree'),
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'taxonomy': (get_reference_fp('gg_13_8-97_otu_taxonomy.txt'),
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'ftp://thebeast.colorado.edu/greengenes_release/'
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'ftp://ftp.microbio.me/greengenes_release/'
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'gg_13_8_otus/taxonomy/97_otu_taxonomy.txt'),
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'sequence': (get_reference_fp('gg_13_8-97_otus.fasta'),
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'ftp://thebeast.colorado.edu/greengenes_release/'
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'ftp://ftp.microbio.me/greengenes_release/'
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'gg_13_8_otus/rep_set/97_otus.fasta')}
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for file_type, (local_fp, url) in viewitems(files):

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