rm nltk

Author: antgonza

CHANGELOG.md

@@ -15,6 +15,7 @@ Deployed on October 14th, 2024
 * `Remove SynDNA reads` superseded `SynDNA Woltka`, which now generates even mates.
 * `Woltka v0.1.7, paired-end` superseded `Woltka v0.1.6` in `qp-woltka`; [more information](https://qiita.ucsd.edu/static/doc/html/processingdata/woltka_pairedend.html). Thank you to @qiyunzhu for the benchmarks!
 * Other general fixes, like [#3424](https://github.com/qiita-spots/qiita/pull/3424), [#3425](https://github.com/qiita-spots/qiita/pull/3425).
+* We updated the available parameters for `Filter features against reference [filter_features]`, `Non V4 16S sequence assessment [non_v4_16s]` and all the phylogenetic analytical commands so they can use `Greengenes2 2024.09`.
 
 
 Version 2024.07

setup.py

@@ -105,7 +105,7 @@
       install_requires=['psycopg2', 'click', 'bcrypt', 'pandas<2.0',
                         'biom-format', 'tornado<6.0', 'toredis', 'redis',
                         'scp', 'pyparsing', 'h5py',  'natsort', 'nose', 'pep8',
-                        'networkx', 'humanize', 'wtforms<3.0.0', 'nltk<=3.8.1',
+                        'networkx', 'humanize', 'wtforms<3.0.0',
                         'openpyxl', 'sphinx-bootstrap-theme', 'Sphinx<3.0',
                         'gitpython', 'redbiom', 'pyzmq', 'sphinx_rtd_theme',
                         'paramiko', 'seaborn',  'matplotlib', 'scipy<=1.10.1',