@@ -8,17 +8,17 @@ These versions will be revised periodically and tested in our infrastructure bef
88
99| Analysis type | Pipeline | Use version |
1010| -----------------------| -----------------------------------------------------------------------| :-----------:|
11- | RNAseq | [ nf-core/rnaseq] ( nf-co.re/rnaseq/1.4.2 ) | 1.4.2 |
11+ | RNAseq | [ nf-core/rnaseq] ( https:// nf-co.re/rnaseq/1.4.2) | 1.4.2 |
1212| RNAseq DE analysis | [ qbic-pipelines/rnadeseq] ( https://github.com/qbic-pipelines/rnadeseq ) | 1.3.2 |
13- | WGS / WES | [ nf-core/sarek] ( nf-co.re/sarek/2.6.1 ) | 2.6.1 |
14- | HLAtyping | [ nf-core/hlatyping] ( nf-co.re/hlatyping/1.2.0 ) | 1.2.0 |
15- | 16S amplicon | [ nf-core/ampliseq] ( nf-co.re/ampliseq/1.1.3 ) | 1.1.3 |
16- | Shotgun metagenomics | [ nf-core/mag] ( nf-co.re/mag/1.1.2 ) | 1.1.2 |
17- | BCR / TCR repseq | [ nf-core/bcellmagic] ( nf-co.re/bcellmagic/1.2.0 ) | 1.2.0 |
18- | CAGEseq | [ nf-core/cageseq] ( nf-co.re/cageseq/1.0.2 ) | 1.0.2 |
19- | MHC immunopeptidomics | [ nf-core/mhcquant] ( nf-co.re/mhcquant/1.6.0 ) | 1.6.0 |
20- | ATACseq | [ nf-core/atacseq] ( nf-co.re/atacseq/1.2.1 ) | 1.2.1 |
21- | Chipseq | [ nf-core/chipseq] ( nf-co.re/chipseq/1.2.1 ) | 1.2.1 |
22- | Epitope prediction | [ nf-core/epitopeprediction] ( nf-co.re/epitopeprediction/1.1.0 ) | 1.1.0 |
23- | Bacterial assembly | [ nf-core/bacass] ( nf-co.re/bacass/1.1.1 ) | 1.1.1 |
24- | RNA fusion | [ nf-core/rnafusion] ( nf-co.re/rnafusion/1.2.0 ) | 1.2.0 |
13+ | WGS / WES | [ nf-core/sarek] ( https:// nf-co.re/sarek/2.6.1) | 2.6.1 |
14+ | HLAtyping | [ nf-core/hlatyping] ( https:// nf-co.re/hlatyping/1.2.0) | 1.2.0 |
15+ | 16S amplicon | [ nf-core/ampliseq] ( https:// nf-co.re/ampliseq/1.1.3) | 1.1.3 |
16+ | Shotgun metagenomics | [ nf-core/mag] ( https:// nf-co.re/mag/1.1.2) | 1.1.2 |
17+ | BCR / TCR repseq | [ nf-core/bcellmagic] ( https:// nf-co.re/bcellmagic/1.2.0) | 1.2.0 |
18+ | CAGEseq | [ nf-core/cageseq] ( https:// nf-co.re/cageseq/1.0.2) | 1.0.2 |
19+ | MHC immunopeptidomics | [ nf-core/mhcquant] ( https:// nf-co.re/mhcquant/1.6.0) | 1.6.0 |
20+ | ATACseq | [ nf-core/atacseq] ( https:// nf-co.re/atacseq/1.2.1) | 1.2.1 |
21+ | Chipseq | [ nf-core/chipseq] ( https:// nf-co.re/chipseq/1.2.1) | 1.2.1 |
22+ | Epitope prediction | [ nf-core/epitopeprediction] ( https:// nf-co.re/epitopeprediction/1.1.0) | 1.1.0 |
23+ | Bacterial assembly | [ nf-core/bacass] ( https:// nf-co.re/bacass/1.1.1) | 1.1.1 |
24+ | RNA fusion | [ nf-core/rnafusion] ( https:// nf-co.re/rnafusion/1.2.0) | 1.2.0 |
0 commit comments