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Add phylogeny workflow #43

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pjotrp opened this issue Apr 29, 2020 · 7 comments
Open

Add phylogeny workflow #43

pjotrp opened this issue Apr 29, 2020 · 7 comments
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@pjotrp
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enhancement New feature or request in progress Part of priority ongoing effort
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Later

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@pjotrp
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pjotrp commented Apr 29, 2020

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@pjotrp pjotrp self-assigned this Apr 29, 2020
@pjotrp pjotrp added the enhancement New feature or request label Apr 29, 2020
@pjotrp pjotrp added this to the Later milestone Apr 29, 2020
@tetron tetron changed the title Add pyhlogeny workflow Add phylogeny workflow Apr 30, 2020
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pjotrp commented Oct 29, 2020

We are working with @ekg and @urbanslug on this one.

@pjotrp pjotrp added the in progress Part of priority ongoing effort label Oct 29, 2020
@pjotrp pjotrp modified the milestones: Later, Go live 1.0 Oct 29, 2020
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pjotrp commented Jan 8, 2021

@urbanslug is getting close with https://github.com/urbanslug/taxophages

@AndreaGuarracino
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@urbanslug, what are we missing to get to show information (metadata, real/predicted variants, etc...) on the tree?

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Hello @AndreaGuarracino and @pjotrp, just a little bit of customizing the Auspice UI and then also maybe some QC that I'm through with @ekg

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Update: I have the workflow here https://github.com/urbanslug/bh20-seq-resource/tree/master/workflows/phylogeny
I now need to figure out dependency management on the host where it'll run.

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pjotrp commented Jan 26, 2021

We'll sort the dependencies. Can you do a full PR on this repo?

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urbanslug commented Jan 26, 2021 •
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Yes, yes for sure 😄 .
[Edit]
Here's the PR: #124

@pjotrp pjotrp modified the milestones: Go live 1.0, Later Apr 26, 2021
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@pjotrp @urbanslug @AndreaGuarracino