azure-pipelines.yml

trigger:
- master
- devel

stages:
  - stage: A
    jobs:
    - job: Ubuntu_Test
      pool:
        vmImage: 'ubuntu-latest'
      strategy:
        matrix:
          Python37:
            python.version: '3.7'

      steps:
      - task: UsePythonVersion@0
        inputs:
          versionSpec: '$(python.version)'
        displayName: 'Use Python $(python.version)'

      - script: |
          sudo apt-get -y install gromacs
          echo "##vso[task.prependpath]$CONDA/bin"
          conda create -y -q -n testenv python=$(python.version)
        displayName: "Create Conda environment and install GROMACS"

      - script: |
          echo "##vso[task.prependpath]$CONDA/bin"
          source activate testenv
          cd $(Build.SourcesDirectory)
          conda install -y conda-build anaconda-client

          export GIT_BUILD_STR=$(git rev-parse --short HEAD)

          if [ $(Build.SourceBranchName) == "master" ]
          then
            conda build conda-recipe/meta.yaml -c conda-forge -c omnia -c michellab --token $(anacondaToken) --user essexlab
          elif [ $(Build.SourceBranchName) == "devel" ]
          then
            conda build conda-recipe/meta.yaml -c conda-forge -c omnia -c michellab --token $(anacondaToken) --user essexlab --label dev
          fi

          PCVERSION=$(less conda-recipe/meta.yaml | grep -Po '(?<=version: )\d.\d.\d')

          if [ $(Build.SourceBranchName) == "master" ]
          then
            conda install -y -c conda-forge -c omnia -c michellab -c essexlab protocaller=$PCVERSION
          elif [ $(Build.SourceBranchName) == "devel" ]
          then
            conda install -y -c conda-forge -c omnia -c michellab -c essexlab/label/dev protocaller=$PCVERSION
          fi

          $CONDA_PREFIX/bin/python -m pip install --upgrade pip
          $CONDA_PREFIX/bin/pip install pytest pytest-azurepipelines
        displayName: 'Install ProtoCaller'

      - script: |
          echo "##vso[task.prependpath]$CONDA/bin"
          source activate testenv
          $CONDA_PREFIX/bin/python -m pytest test/
        displayName: 'Test ProtoCaller'
  - stage: B
    jobs:
    - job: macOS_Test
      pool:
        vmImage: 'macOS-latest'
      strategy:
        matrix:
          Python37:
            python.version: '3.7'

      steps:
      - task: UsePythonVersion@0
        inputs:
          versionSpec: '$(python.version)'
        displayName: 'Use Python $(python.version)'

      - script: |
          sudo chown -R $USER $CONDA
          $CONDA/bin/conda create -y -q -n testenv python=$(python.version)
        displayName: "Create Conda environment"

      - script: |
          /usr/bin/ruby -e "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/master/install)"
          brew install gromacs
          brew cask install firefox
          brew cask install chromedriver
          brew install grep
        displayName: "Install Homebrew, GROMACS, firefox, chromedriver and ggrep"

      - script: |
          source $CONDA/bin/activate testenv
          cd $(Build.SourcesDirectory)
          $CONDA/bin/conda install -y conda-build anaconda-client

          export GIT_BUILD_STR=$(git rev-parse --short HEAD)

          PCVERSION=$(less conda-recipe/meta.yaml | ggrep -Po '(?<=version: )\d.\d.\d')

          if [ $(Build.SourceBranchName) == "master" ]
          then
            $CONDA/bin/conda install -y -c conda-forge -c omnia -c michellab -c essexlab protocaller=$PCVERSION
          elif [ $(Build.SourceBranchName) == "devel" ]
          then
            $CONDA/bin/conda install -y -c conda-forge -c omnia -c michellab -c essexlab/label/dev protocaller=$PCVERSION
          fi

          $CONDA_PREFIX/bin/python -m pip install --upgrade pip
          $CONDA_PREFIX/bin/pip install pytest pytest-azurepipelines
        displayName: 'Install ProtoCaller'

      - script: |
          source $CONDA/bin/activate testenv
          $CONDA_PREFIX/bin/python -m pytest test/
        displayName: 'Test ProtoCaller'