From f5a1a59a568c896900d3c2c90b7efb1a0ee4464f Mon Sep 17 00:00:00 2001
From: "scala-steward-projectglow[bot]"
 <159218053+scala-steward-projectglow[bot]@users.noreply.github.com>
Date: Sun, 3 May 2026 00:30:47 +0000
Subject: [PATCH] Update htsjdk to 5.0.0

---
 build.sbt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/build.sbt b/build.sbt
index 8c49c665f..cce906eaf 100644
--- a/build.sbt
+++ b/build.sbt
@@ -187,7 +187,7 @@ ThisBuild / coreDependencies := (providedSparkDependencies.value ++ testCoreDepe
   "io.netty" % "netty-all" % "4.1.96.Final",
   "io.netty" % "netty-handler" % "4.1.96.Final",
   "io.netty" % "netty-transport-native-epoll" % "4.1.96.Final",
-  "com.github.samtools" % "htsjdk" % "3.0.5",
+  "com.github.samtools" % "htsjdk" % "5.0.0",
   "org.yaml" % "snakeyaml" % "2.2",
   "com.univocity" % "univocity-parsers" % "2.9.1",
   // Fix CVE: Upgrade Avro to 1.11.4+ to fix Arbitrary Code Execution vulnerability