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Hi Programmable Bio!
Moppit is a great tool, and my cell bio lab is excited to generate specific binders! I am having some trouble with the environment.yml file, the build fails in micromamba and in conda I see the following error:
_openmp_mutex==5.1=1_gnu -> libgomp[version='>=7.5.0']
libgcc-ng==11.2.0=h1234567_1 -> _openmp_mutex -> libgomp[version='>=7.3.0|>=7.5.0']
libgomp==11.2.0=h1234567_1The following specifications were found to be incompatible with your system:
- feature:/linux-64::__glibc==2.34=0
- feature:/linux-64::__unix==0=0
- feature:|@/linux-64::__glibc==2.34=0
- feature:|@/linux-64::__unix==0=0
- _openmp_mutex==5.1=1_gnu -> libgomp[version='>=7.5.0'] -> __glibc[version='>=2.17,<3.0.a0']
- libffi==3.4.4=h6a678d5_1 -> libgcc-ng[version='>=11.2.0'] -> __glibc[version='>=2.17']
- libgcc-ng==11.2.0=h1234567_1 -> __glibc[version='>=2.17']
- libgcc-ng==11.2.0=h1234567_1 -> _openmp_mutex -> __glibc[version='>=2.17,<3.0.a0']
- libstdcxx-ng==11.2.0=h1234567_1 -> __glibc[version='>=2.17']
- ncurses==6.4=h6a678d5_0 -> libgcc-ng[version='>=11.2.0'] -> __glibc[version='>=2.17']
- openssl==3.0.14=h5eee18b_0 -> ca-certificates -> __unix
- openssl==3.0.14=h5eee18b_0 -> ca-certificates -> __win
- openssl==3.0.14=h5eee18b_0 -> libgcc-ng[version='>=11.2.0'] -> __glibc[version='>=2.17']
- pip==24.0=py39h06a4308_0 -> python[version='>=3.9,<3.10.0a0'] -> __glibc[version='>=2.17,<3.0.a0']
- python=3.10 -> __glibc[version='>=2.17,<3.0.a0']
- python=3.10 -> libgcc-ng[version='>=11.2.0'] -> __glibc[version='>=2.17']
- readline==8.2=h5eee18b_0 -> libgcc-ng[version='>=11.2.0'] -> __glibc[version='>=2.17|>=2.17,<3.0.a0']
- setuptools==69.5.1=py39h06a4308_0 -> python[version='>=3.9,<3.10.0a0'] -> __glibc[version='>=2.17,<3.0.a0']
- sqlite==3.45.3=h5eee18b_0 -> libgcc-ng[version='>=11.2.0'] -> __glibc[version='>=2.17|>=2.17,<3.0.a0']
- tk==8.6.14=h39e8969_0 -> libgcc-ng[version='>=11.2.0'] -> __glibc[version='>=2.17']
- wheel==0.43.0=py39h06a4308_0 -> python[version='>=3.9,<3.10.0a0'] -> __glibc[version='>=2.17,<3.0.a0']
- zlib==1.2.13=h5eee18b_1 -> libgcc-ng[version='>=11.2.0'] -> __glibc[version='>=2.17']
Your installed version is: 0
Note that strict channel priority may have removed packages required for satisfiability.```
And
```Job Name: make_env
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working...
Found conflicts! Looking for incompatible packages.
This can take several minutes. Press CTRL-C to abort.
failed
Solving environment: ...working...
Found conflicts! Looking for incompatible packages.
This can take several minutes. Press CTRL-C to abort.
failed
make_env.29119934.out (END)
I am in a time crunch, it seems we can use https://colab.research.google.com/drive/1SL3H_vI1y6qccce3vLOo0W2EpxIF4Xik?usp=sharing#scrollTo=HxMlwm4nuo9G but I only have the positions in my protein I would like it to bind (not continuous), I don't have a template binder, is this necessary or can any starter binder be input (like default) and the binder will evolve appropriately?
Thank you!!
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