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Environment setup, original binder sequence #3

@poojaparameswaran99

Description

@poojaparameswaran99

Hi Programmable Bio!
Moppit is a great tool, and my cell bio lab is excited to generate specific binders! I am having some trouble with the environment.yml file, the build fails in micromamba and in conda I see the following error:

_openmp_mutex==5.1=1_gnu -> libgomp[version='>=7.5.0']
libgcc-ng==11.2.0=h1234567_1 -> _openmp_mutex -> libgomp[version='>=7.3.0|>=7.5.0']
libgomp==11.2.0=h1234567_1The following specifications were found to be incompatible with your system:

  - feature:/linux-64::__glibc==2.34=0
  - feature:/linux-64::__unix==0=0
  - feature:|@/linux-64::__glibc==2.34=0
  - feature:|@/linux-64::__unix==0=0
  - _openmp_mutex==5.1=1_gnu -> libgomp[version='>=7.5.0'] -> __glibc[version='>=2.17,<3.0.a0']
  - libffi==3.4.4=h6a678d5_1 -> libgcc-ng[version='>=11.2.0'] -> __glibc[version='>=2.17']
  - libgcc-ng==11.2.0=h1234567_1 -> __glibc[version='>=2.17']
  - libgcc-ng==11.2.0=h1234567_1 -> _openmp_mutex -> __glibc[version='>=2.17,<3.0.a0']
  - libstdcxx-ng==11.2.0=h1234567_1 -> __glibc[version='>=2.17']
  - ncurses==6.4=h6a678d5_0 -> libgcc-ng[version='>=11.2.0'] -> __glibc[version='>=2.17']
  - openssl==3.0.14=h5eee18b_0 -> ca-certificates -> __unix
  - openssl==3.0.14=h5eee18b_0 -> ca-certificates -> __win
  - openssl==3.0.14=h5eee18b_0 -> libgcc-ng[version='>=11.2.0'] -> __glibc[version='>=2.17']
  - pip==24.0=py39h06a4308_0 -> python[version='>=3.9,<3.10.0a0'] -> __glibc[version='>=2.17,<3.0.a0']
  - python=3.10 -> __glibc[version='>=2.17,<3.0.a0']
  - python=3.10 -> libgcc-ng[version='>=11.2.0'] -> __glibc[version='>=2.17']
  - readline==8.2=h5eee18b_0 -> libgcc-ng[version='>=11.2.0'] -> __glibc[version='>=2.17|>=2.17,<3.0.a0']
  - setuptools==69.5.1=py39h06a4308_0 -> python[version='>=3.9,<3.10.0a0'] -> __glibc[version='>=2.17,<3.0.a0']
  - sqlite==3.45.3=h5eee18b_0 -> libgcc-ng[version='>=11.2.0'] -> __glibc[version='>=2.17|>=2.17,<3.0.a0']
  - tk==8.6.14=h39e8969_0 -> libgcc-ng[version='>=11.2.0'] -> __glibc[version='>=2.17']
  - wheel==0.43.0=py39h06a4308_0 -> python[version='>=3.9,<3.10.0a0'] -> __glibc[version='>=2.17,<3.0.a0']
  - zlib==1.2.13=h5eee18b_1 -> libgcc-ng[version='>=11.2.0'] -> __glibc[version='>=2.17']

Your installed version is: 0

Note that strict channel priority may have removed packages required for satisfiability.```


And 
```Job Name: make_env
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... 
Found conflicts! Looking for incompatible packages.
This can take several minutes.  Press CTRL-C to abort.
failed
Solving environment: ...working... 
Found conflicts! Looking for incompatible packages.
This can take several minutes.  Press CTRL-C to abort.
failed
make_env.29119934.out (END)

I am in a time crunch, it seems we can use https://colab.research.google.com/drive/1SL3H_vI1y6qccce3vLOo0W2EpxIF4Xik?usp=sharing#scrollTo=HxMlwm4nuo9G but I only have the positions in my protein I would like it to bind (not continuous), I don't have a template binder, is this necessary or can any starter binder be input (like default) and the binder will evolve appropriately?

Thank you!!

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