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This repository was archived by the owner on Jan 9, 2023. It is now read-only.
Instead of manipulating data during preprocessing to identify cases and controls, I think it would be a lot simpler to optionally supply a list of patient IDs and labels to retrieve.
In a Jupyter notebook (say), we could build a suitable cohort of cases and controls, and then select for only these IDs during chunk iteration. I think this could speed up ETL significantly.
Instead of manipulating data during preprocessing to identify cases and controls, I think it would be a lot simpler to optionally supply a list of patient IDs and labels to retrieve.
In a Jupyter notebook (say), we could build a suitable cohort of cases and controls, and then select for only these IDs during chunk iteration. I think this could speed up ETL significantly.