diff --git a/.env.TEMPLATE b/.env.TEMPLATE index d360482..da917a4 100644 --- a/.env.TEMPLATE +++ b/.env.TEMPLATE @@ -43,7 +43,7 @@ USE_GEMINI_EMBEDDINGS=1 GEMINI_EMBEDDING_MODEL_NAME="text-embedding-004" # should be filled with the URL to the text embedding model -# (you'll need to contact a manugen-ai admin for this URL; +# (you'll need to contact a manufold admin for this URL; # we can't make it publicly available) WITHDRARXIV_EMBEDDINGS_URL__TEXT_EMBEDDING_004="" diff --git a/.github/workflows/run-tests.yml b/.github/workflows/run-tests.yml index 70ca3dd..f43d2fc 100644 --- a/.github/workflows/run-tests.yml +++ b/.github/workflows/run-tests.yml @@ -29,7 +29,13 @@ jobs: - name: Run ollama run: | ollama serve & + + until curl -s http://localhost:11434/api/tags > /dev/null; do + sleep 1 + done + ollama pull llama3.2:3b + - name: Python setup uses: actions/setup-python@v5 with: @@ -39,7 +45,7 @@ jobs: - name: Run pytest # cd into the packages dir and run pytest # note: we skip notebooks as these are for reporting only. - run: cd packages/manugen-ai && uv run --frozen pytest -m "not notebooks" + run: cd packages/manufold && uv run --frozen pytest -m "not notebooks" env: # use the same models here to keep ci run duration low # by avoiding extra downloads diff --git a/.gitignore b/.gitignore index e587645..526ec51 100644 --- a/.gitignore +++ b/.gitignore @@ -195,7 +195,10 @@ cython_debug/ withdrarxiv.parquet retraction_watch.csv -withdrarxiv_embeddings.duckdb +withdrarxiv_embeddings*.duckdb + +# ignore session db, wherever it ends up being created +session.db # gitignore the model cache directory model_cache/ diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 8ac8aa5..04aa832 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -9,7 +9,7 @@ repos: - id: check-yaml - id: detect-private-key - repo: https://github.com/tox-dev/pyproject-fmt - rev: "v2.11.1" + rev: "v2.16.2" hooks: - id: pyproject-fmt - repo: https://github.com/citation-file-format/cffconvert @@ -17,7 +17,7 @@ repos: hooks: - id: validate-cff - repo: https://github.com/codespell-project/codespell - rev: v2.4.1 + rev: v2.4.2 hooks: - id: codespell exclude: | @@ -34,17 +34,17 @@ repos: additional_dependencies: - mdformat-gfm - repo: https://github.com/adrienverge/yamllint - rev: v1.37.1 + rev: v1.38.0 hooks: - id: yamllint exclude: pre-commit-config.yaml - repo: https://github.com/astral-sh/ruff-pre-commit - rev: "v0.14.7" + rev: "v0.15.5" hooks: - id: ruff-format - id: ruff-check - repo: https://github.com/rhysd/actionlint - rev: v1.7.9 + rev: v1.7.11 hooks: - id: actionlint - repo: https://gitlab.com/vojko.pribudic.foss/pre-commit-update diff --git a/CITATION.cff b/CITATION.cff index 30dbf6a..a2bed91 100644 --- a/CITATION.cff +++ b/CITATION.cff @@ -1,5 +1,5 @@ cff-version: 1.2.0 -title: Manugen-AI +title: Manufold message: >- If you use this work in some way, please use the information found within the CITATION.cff file. diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index 0b58dcf..49f5227 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -1,6 +1,6 @@ ## Contributing -Thank you for your interest in contributing to the Manugen AI project! +Thank you for your interest in contributing to the Manufold project! We welcome contributions from the community to help improve and expand the functionality of this multi-agent tool for creating academic manuscripts. ### How to Contribute diff --git a/README.md b/README.md index 2b26fd9..b7ee852 100644 --- a/README.md +++ b/README.md @@ -1,15 +1,15 @@ -# Manugen AI +# Manufold (formerly, Manugen AI) -Project Logo +Project Logo Writing academic manuscripts can be tedious. Imagine that you could bring together your results, prior research, source code, and some brief bullet points per section to generate a manuscript automatically. -That is **Manugen-AI**. +That is **Manufold** (formerly, Manugen AI). -This repo holds our submission for the 2025 [Agent Development Kit (ADK) Hackathon with Google Cloud](https://googlecloudmultiagents.devpost.com/) - Manugen AI. -**Manugen AI** is a multi-agent tool for drafting academic manuscripts from assets and guidance: a collection of figures, text/instructions, source code, and other content files. +This repo holds our submission for the 2025 [Agent Development Kit (ADK) Hackathon with Google Cloud](https://googlecloudmultiagents.devpost.com/) - Manugen AI (now Manufold). +**Manufold** is a multi-agent tool for drafting academic manuscripts from assets and guidance: a collection of figures, text/instructions, source code, and other content files. It uses agents based on large language models (LLMs) and the [Google ADK](https://google.github.io/adk-docs/). -See the [Manugen AI package README](packages/manugen-ai/README.md) for more details on the package itself. +See the [Manugen AI package README](packages/manufold/README.md) for more details on the package itself. The project consists of a web-based frontend, backend, and additional services. It includes Docker Compose configuration to run the application stack locally. @@ -59,7 +59,7 @@ Make sure the model you pick [supports "tools"](https://ollama.com/search?c=tool ollama pull qwen3:8b ``` -If you want to use Manugen-AI to upload figures and interpret them, you'll also need a model that [supports "vision"](https://ollama.com/search?c=vision), such as [Gemma3](https://ollama.com/library/gemma3): +If you want to use Manufold to upload figures and interpret them, you'll also need a model that [supports "vision"](https://ollama.com/search?c=vision), such as [Gemma3](https://ollama.com/library/gemma3): ```bash # gemma3 supports vision, which can be used to interpret your figures @@ -128,7 +128,7 @@ You'll see two text fields: one on the left for entering manuscript content in M ### Draft a manuscript -Manugen-AI allows a human author to quickly draft a scientific manuscript from a minimum set of research assets (such as figures or source code) and human guidance. +Manufold allows a human author to quickly draft a scientific manuscript from a minimum set of research assets (such as figures or source code) and human guidance. After opening the web interface in your browser, follow these steps to draft a manuscript from scratch: 1. **Load an example of human guidelines.** @@ -172,7 +172,7 @@ Does your research involve the use of a version controlled repository (for examp You can use Manugen AI to create a manuscript by passing the URL for the project with the "Repos" action. 1. Within the frontend, refresh your browser so you start with an empty session. -1. On the left panel, paste in a GitHub URL (e.g. `https://github.com/pivlab/manugen-ai`). +1. On the left panel, paste in a GitHub URL (e.g. `https://github.com/pivlab/manufold`). 1. Highlight the GitHub URL and click the "Repos" action. 1. Manugen AI agents will absorb information about your repository and provide a draft manuscript in return. @@ -205,7 +205,7 @@ The project is a standard three-tier web application, with the following compone - `./frontend/`: A web-based user interface for interacting with the application, built with React. - `./backend/`: A REST API that serves the frontend and handles requests from the web interface. -- `./packages/manugen-ai/`: The *Manugen AI* package, which is used to generate academic manuscripts from content files. +- `./packages/manufold/`: The *Manufold* package, which is used to generate academic manuscripts from content files. The backend relies on this package to perform the actual manuscript generation. The project includes an optional PostgreSQL database that, if available, ADK will use to persist session data between stack runs. diff --git a/backend/Dockerfile b/backend/Dockerfile index e8d2d43..7397358 100644 --- a/backend/Dockerfile +++ b/backend/Dockerfile @@ -3,7 +3,7 @@ # copied from https://docs.astral.sh/uv/guides/integration/docker/#intermediate-layers # note that this Dockerfile's context should be set to the project root, due to -# the fact that it relies on a package under /packages/manugen-ai +# the fact that it relies on a package under /packages/manufold # all backend-specific path refs should be prefixed with `backend/` # Install uv @@ -18,8 +18,8 @@ RUN apt-get update && apt-get install -y --no-install-recommends \ # Change the working directory to the `app` directory WORKDIR /app -# copy packages/manugen-ai into /opt/manugen-ai -COPY --exclude=.venv ./packages/manugen-ai/ /packages/manugen-ai/ +# copy packages/manufold into /opt/manufold +COPY --exclude=.venv ./packages/manufold/ /packages/manufold/ # Install dependencies ENV VIRTUAL_ENV=/app/.venv diff --git a/backend/README.md b/backend/README.md index 1482782..770e312 100644 --- a/backend/README.md +++ b/backend/README.md @@ -1,6 +1,6 @@ -# Manugen-AI Backend +# Manufold Backend -This folder implements a simple API for the frontend to invoke agents from the `manugen-ai` package, located at [packages/manugen-ai/](../packages/manugen-ai). +This folder implements a simple API for the frontend to invoke agents from the `manufold` package, located at [packages/manufold/](../packages/manufold). While the API is intended to be run as part of the stack (see the [root README](../README.md) for details), you can run it independently on the host. @@ -12,7 +12,7 @@ First, install the dependencies: uv sync ``` -This will install `manugen-ai` as well as other dependencies for running the FastAPI server. +This will install `manufold` as well as other dependencies for running the FastAPI server. Then, run the API: diff --git a/backend/pyproject.toml b/backend/pyproject.toml index 270e233..44787ea 100644 --- a/backend/pyproject.toml +++ b/backend/pyproject.toml @@ -1,16 +1,19 @@ [project] -name = "manugen-ai-backend" +name = "manufold-backend" version = "0.1.0" -description = "A backend for the Manugen AI project, providing APIs for AI-driven manuscript generation." +description = "A backend for the Manufold project, providing APIs for AI-driven manuscript generation." readme = "README.md" requires-python = ">=3.12,<3.13" -classifiers = [ "Programming Language :: Python :: 3 :: Only", "Programming Language :: Python :: 3.12" ] +classifiers = [ + "Programming Language :: Python :: 3 :: Only", + "Programming Language :: Python :: 3.12", +] dependencies = [ "fastapi>=0.104", - "manugen-ai", + "manufold", "uvicorn[standard]>=0.24", ] -[tool.uv.sources] -# manugen-ai = { path = "/opt/manugen-ai" } -manugen-ai = { path = "../packages/manugen-ai" } +[tool.uv] +# manufold = { path = "/opt/manufold" } +sources.manufold = { path = "../packages/manufold" } diff --git a/backend/src/__init__.py b/backend/src/__init__.py index e0baf3f..0cfb5c8 100644 --- a/backend/src/__init__.py +++ b/backend/src/__init__.py @@ -1,5 +1,5 @@ """ -Manugen AI Backend Package +Manufold Backend Package """ __version__ = "0.1.0" diff --git a/backend/src/adk_api.py b/backend/src/adk_api.py index 22a6a85..a961794 100644 --- a/backend/src/adk_api.py +++ b/backend/src/adk_api.py @@ -9,7 +9,7 @@ - (GET) /adk_api/apps//users//sessions query for all sessions for a user under (where is a - folder under ../packages/manugen-ai/src/manugen_ai/agents/) + folder under ../packages/manufold/src/manufold/agents/) - (POST) /adk_api/apps//users//sessions/ create a new session for a user under with the given session_id for running agents, these two endpoints are available: @@ -44,7 +44,7 @@ adk_app = get_fast_api_app( agents_dir=os.environ.get( - "MANUGEN_AGENTS_DIR", "/packages/manugen-ai/src/manugen_ai/agents/" + "MANUGEN_AGENTS_DIR", "/packages/manufold/src/manufold/agents/" ), session_service_uri=os.environ.get("SESSION_DB_CONN_STRING"), # artifact_service_uri= , diff --git a/backend/src/main.py b/backend/src/main.py index ff57408..e97d230 100644 --- a/backend/src/main.py +++ b/backend/src/main.py @@ -1,10 +1,10 @@ """ -FastAPI backend for Manugen AI project. +FastAPI backend for Manufold project. """ import os -# read version number from manugen_ai package +# read version number from manufold package from importlib.metadata import version import uvicorn @@ -13,12 +13,12 @@ from .adk_api import adk_app # Import the ADK FastAPI app -MANUGEN_VERSION = version("manugen_ai") +MANUGEN_VERSION = version("manufold") # Create FastAPI app app = FastAPI( - title="Manugen AI Backend", - description="A backend for the Manugen AI project, providing APIs for AI-driven manuscript generation.", + title="Manufold Backend", + description="A backend for the Manufold project, providing APIs for AI-driven manuscript generation.", version=MANUGEN_VERSION, docs_url="/docs", redoc_url="/redoc", @@ -40,7 +40,7 @@ async def root(): """Root endpoint returning basic API information.""" root_path = os.environ.get("API_ROOT_PREFIX", "") return { - "message": "Welcome to Manugen AI Backend", + "message": "Welcome to Manufold Backend", "version": MANUGEN_VERSION, "docs": f"{root_path}/docs", "adk_api_docs": f"{root_path}/adk_api/docs", @@ -50,7 +50,7 @@ async def root(): @app.get("/health") async def health_check(): """Health check endpoint.""" - return {"status": "healthy", "service": "manugen-ai-backend"} + return {"status": "healthy", "service": "manufold-backend"} @app.get("/api/v1/status") diff --git a/backend/start_adk_web.sh b/backend/start_adk_web.sh index beb992d..9578b9b 100755 --- a/backend/start_adk_web.sh +++ b/backend/start_adk_web.sh @@ -1,6 +1,6 @@ #!/bin/bash -cd /packages/manugen-ai/src/manugen_ai/agents/ +cd /packages/manufold/src/manufold/agents/ if [ -z "${SESSION_DB_CONN_STRING}" ]; then SESSION_DB_ARG="" diff --git a/backend/start_api_server.sh b/backend/start_api_server.sh index 247db23..d25b0b5 100755 --- a/backend/start_api_server.sh +++ b/backend/start_api_server.sh @@ -1,10 +1,10 @@ #!/bin/bash -# Start a FastAPI server implementing the Manugen AI Backend +# Start a FastAPI server implementing the Manufold Backend MANUGEN_API_PORT=${MANUGEN_API_PORT:-8000} -echo "Starting Manugen AI Backend on http://0.0.0.0:${MANUGEN_API_PORT}" +echo "Starting Manufold Backend on http://0.0.0.0:${MANUGEN_API_PORT}" echo "- API Documentation will be available at http://localhost:${MANUGEN_API_PORT}/docs" echo "- Press Ctrl+C to stop the server" echo "" @@ -17,7 +17,7 @@ cd "$(dirname "$0")" # ensure the text embedding model is downloaded if [ "${USE_GEMINI_EMBEDDINGS:-0}" != "1" ]; then echo "* Downloading FlagEmbedding text embedding model (${FLAGEMBEDDING_MODEL_OR_PATH:-BAAI/bge-m3})..." - uv run python -c "from manugen_ai.data import get_flag_embedding_model ; get_flag_embedding_model()" + uv run python -c "from manufold.data import get_flag_embedding_model ; get_flag_embedding_model()" else echo "* Using Gemini text embeddings via the Google GenAI API, skipping download." fi @@ -29,12 +29,12 @@ if [ "${HOT_RELOAD_BACKEND}" = "1" ]; then --host 0.0.0.0 \ --port ${MANUGEN_API_PORT} \ --reload \ - --log-level info + --log-level ${LOG_LEVEL:-info} else # 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b/frontend/src/pages/dev-test.md index edd5ab4..ebda30e 100644 --- a/frontend/src/pages/dev-test.md +++ b/frontend/src/pages/dev-test.md @@ -5,7 +5,7 @@ Ut enim ad minim veniam, quis nostrud exercitation ullamco laboris nisi ut aliqu Duis aute irure dolor in reprehenderit in voluptate velit esse cillum dolore eu fugiat nulla pariatur. Excepteur sint occaecat cupidatat non proident, sunt in culpa qui officia deserunt mollit anim id est laborum. ---- +______________________________________________________________________ **This is bold text** diff --git a/frontend/src/pages/example-2.md b/frontend/src/pages/example-2.md index e1f9fa5..a542bdd 100644 --- a/frontend/src/pages/example-2.md +++ b/frontend/src/pages/example-2.md @@ -1 +1 @@ -https://github.com/pivlab/manugen-ai +https://github.com/pivlab/manufold diff --git a/packages/Dockerfile b/packages/Dockerfile index 7bd2cf9..0b55ba0 100644 --- a/packages/Dockerfile +++ b/packages/Dockerfile @@ -9,12 +9,12 @@ WORKDIR /app # Install dependencies RUN --mount=type=cache,target=/root/.cache/uv \ - --mount=type=bind,source=manugen-ai/uv.lock,target=uv.lock \ - --mount=type=bind,source=manugen-ai/pyproject.toml,target=pyproject.toml \ + --mount=type=bind,source=manufold/uv.lock,target=uv.lock \ + --mount=type=bind,source=manufold/pyproject.toml,target=pyproject.toml \ uv sync --frozen --no-install-project # Copy the project into the image -ADD ./manugen-ai/ /app +ADD ./manufold/ /app # Sync the project RUN --mount=type=cache,target=/root/.cache/uv \ diff --git a/packages/manugen-ai/README.md b/packages/manufold/README.md similarity index 91% rename from packages/manugen-ai/README.md rename to packages/manufold/README.md index 352f969..fb76915 100644 --- a/packages/manugen-ai/README.md +++ b/packages/manufold/README.md @@ -1,6 +1,6 @@ -# Manugen AI +# Manufold -*Manugen AI* is a multi-agent tool for creating academic manuscripts from a collection of images, text, and other content files. +*Manufold* is a multi-agent tool for creating academic manuscripts from a collection of images, text, and other content files. It leverages the capabilities of large language models (LLMs) to automate the generation of manuscripts, making it easier for researchers to produce first drafts of academic papers. We intend to submit this project to the 2025 [Agent Development Kit Hackathon with Google Cloud](https://googlecloudmultiagents.devpost.com/). @@ -37,7 +37,7 @@ You can also use the project as a Python package. Here is an example of how to u ```python from pathlib import Path -from manugen_ai.cli import manugen +from manufold.cli import manugen manugen( content_dir=Path("/path/to/content"), diff --git a/packages/manugen-ai/docs/devpost/additional_info.md b/packages/manufold/docs/devpost/additional_info.md similarity index 95% rename from packages/manugen-ai/docs/devpost/additional_info.md rename to packages/manufold/docs/devpost/additional_info.md index 3764d96..bae7ddb 100644 --- a/packages/manugen-ai/docs/devpost/additional_info.md +++ b/packages/manufold/docs/devpost/additional_info.md @@ -17,7 +17,7 @@ To test Manugen-AI, you can either use our hosted demo ([see below](#hosted-demo 1. To draft the manuscript, highlight one section at a time (for example, "Introduction", "Results", etc) by selecting the entire section content and click on the "Draft" action, and wait for the text to come back. 1. Drafted sections may be further enhanced by adding instructions to the text, selecting the entire section, and clicking on "Draft". The system will edit the existing draft and follow your additional instructions. -1. Figures may be uploaded (it works with PNG format) by clicking on the "Toggle Attachments" button at the top left. If you want to download figures for the example, please see [here](https://github.com/pivlab/manugen-ai/tree/main/frontend/public/example). +1. Figures may be uploaded (it works with PNG format) by clicking on the "Toggle Attachments" button at the top left. If you want to download figures for the example, please see [here](https://github.com/pivlab/manufold/tree/main/frontend/public/example). 1. Once a figure is uploaded, you'll see it gets a figure number like "Figure 1", a title and a description. You can then reference this figure using its figure number (like "Figure 1") in the Results section, and the system will use the Figure title and description. ## Local demo @@ -36,7 +36,7 @@ Link to our blog post: https://pivlab.org/2025/06/23/Google-ADK-Hackathon.html ## A link to your contribution to the Agent Development Kit open source repository -https://github.com/pivlab/manugen-ai/issues/11 +https://github.com/pivlab/manufold/issues/11 ## List all of the Google Cloud technologies you used in your Project. diff --git a/packages/manugen-ai/docs/devpost/project_story.md b/packages/manufold/docs/devpost/project_story.md similarity index 100% rename from packages/manugen-ai/docs/devpost/project_story.md rename to packages/manufold/docs/devpost/project_story.md diff --git a/packages/manugen-ai/docs/media/ai_and_scientist_bright_future.png b/packages/manufold/docs/media/ai_and_scientist_bright_future.png similarity index 100% rename from packages/manugen-ai/docs/media/ai_and_scientist_bright_future.png rename to packages/manufold/docs/media/ai_and_scientist_bright_future.png diff --git a/packages/manugen-ai/docs/media/ai_assisted_writing.png b/packages/manufold/docs/media/ai_assisted_writing.png similarity index 100% rename from packages/manugen-ai/docs/media/ai_assisted_writing.png rename to packages/manufold/docs/media/ai_assisted_writing.png diff --git a/packages/manugen-ai/docs/media/ai_enhanced_documents.png b/packages/manufold/docs/media/ai_enhanced_documents.png similarity index 100% rename from packages/manugen-ai/docs/media/ai_enhanced_documents.png rename to packages/manufold/docs/media/ai_enhanced_documents.png diff --git a/packages/manugen-ai/docs/media/citation_agent.png b/packages/manufold/docs/media/citation_agent.png similarity index 100% rename from packages/manugen-ai/docs/media/citation_agent.png rename to packages/manufold/docs/media/citation_agent.png diff --git a/packages/manugen-ai/docs/media/coordinator_agent_all_lr.png b/packages/manufold/docs/media/coordinator_agent_all_lr.png similarity index 100% rename from packages/manugen-ai/docs/media/coordinator_agent_all_lr.png rename to packages/manufold/docs/media/coordinator_agent_all_lr.png diff --git a/packages/manugen-ai/docs/media/coordinator_agent_all_tb.png b/packages/manufold/docs/media/coordinator_agent_all_tb.png similarity index 100% rename from packages/manugen-ai/docs/media/coordinator_agent_all_tb.png rename to packages/manufold/docs/media/coordinator_agent_all_tb.png diff --git a/packages/manugen-ai/docs/media/coordinator_agent_core_lr.png b/packages/manufold/docs/media/coordinator_agent_core_lr.png similarity index 100% rename from packages/manugen-ai/docs/media/coordinator_agent_core_lr.png rename to packages/manufold/docs/media/coordinator_agent_core_lr.png diff --git a/packages/manugen-ai/docs/media/coordinator_agent_core_tb.png b/packages/manufold/docs/media/coordinator_agent_core_tb.png similarity index 100% rename from packages/manugen-ai/docs/media/coordinator_agent_core_tb.png rename to packages/manufold/docs/media/coordinator_agent_core_tb.png diff --git a/packages/manugen-ai/docs/media/coordinator_agent_extensions_lr.png b/packages/manufold/docs/media/coordinator_agent_extensions_lr.png similarity index 100% rename from packages/manugen-ai/docs/media/coordinator_agent_extensions_lr.png rename to packages/manufold/docs/media/coordinator_agent_extensions_lr.png diff --git a/packages/manugen-ai/docs/media/coordinator_agent_extensions_tb.png b/packages/manufold/docs/media/coordinator_agent_extensions_tb.png similarity index 100% rename from packages/manugen-ai/docs/media/coordinator_agent_extensions_tb.png rename to packages/manufold/docs/media/coordinator_agent_extensions_tb.png diff --git a/packages/manugen-ai/docs/media/figure_agent.png b/packages/manufold/docs/media/figure_agent.png similarity index 100% rename from packages/manugen-ai/docs/media/figure_agent.png rename to packages/manufold/docs/media/figure_agent.png diff --git a/packages/manugen-ai/docs/media/generate_diagrams.py b/packages/manufold/docs/media/generate_diagrams.py similarity index 85% rename from packages/manugen-ai/docs/media/generate_diagrams.py rename to packages/manufold/docs/media/generate_diagrams.py index 3038630..1c4ba6e 100644 --- a/packages/manugen-ai/docs/media/generate_diagrams.py +++ b/packages/manufold/docs/media/generate_diagrams.py @@ -5,26 +5,26 @@ import pathlib from google.adk.agents import Agent, ParallelAgent, SequentialAgent -from manugen_ai.agents.ai_science_writer.sub_agents.citations import ( +from manufold.agents.ai_science_writer.sub_agents.citations import ( root_agent as citation_agent, ) -from manugen_ai.agents.ai_science_writer.sub_agents.coordinator.agent import ( +from manufold.agents.ai_science_writer.sub_agents.coordinator.agent import ( coordinator_agent, ) -from manugen_ai.agents.ai_science_writer.sub_agents.figure import figure_agent -from manugen_ai.agents.ai_science_writer.sub_agents.manuscript_drafter import ( +from manufold.agents.ai_science_writer.sub_agents.figure import figure_agent +from manufold.agents.ai_science_writer.sub_agents.manuscript_drafter import ( manuscript_drafter_agent, ) -from manugen_ai.agents.ai_science_writer.sub_agents.repo_to_paper import ( +from manufold.agents.ai_science_writer.sub_agents.repo_to_paper import ( root_agent as repo_agent, ) -from manugen_ai.agents.ai_science_writer.sub_agents.retraction_avoidance import ( +from manufold.agents.ai_science_writer.sub_agents.retraction_avoidance import ( root_agent as retraction_avoidance_agent, ) -from manugen_ai.agents.ai_science_writer.sub_agents.reviewer import ( +from manufold.agents.ai_science_writer.sub_agents.reviewer import ( root_agent as review_agent, ) -from manugen_ai.utils import build_mermaid +from manufold.utils import build_mermaid # create a custom agent for diagramming the section_writer_agent, which is a custom agent manuscript_agent_for_diagramming = SequentialAgent( diff --git a/packages/manugen-ai/docs/media/hackathon.png b/packages/manufold/docs/media/hackathon.png similarity index 100% rename from packages/manugen-ai/docs/media/hackathon.png rename to packages/manufold/docs/media/hackathon.png diff --git a/packages/manugen-ai/docs/media/manugen-ai-frontend.png b/packages/manufold/docs/media/manugen-ai-frontend.png similarity index 100% rename from packages/manugen-ai/docs/media/manugen-ai-frontend.png rename to packages/manufold/docs/media/manugen-ai-frontend.png diff --git a/packages/manugen-ai/docs/media/manugen-ai-logo.png b/packages/manufold/docs/media/manugen-ai-logo.png similarity index 100% rename from packages/manugen-ai/docs/media/manugen-ai-logo.png rename to packages/manufold/docs/media/manugen-ai-logo.png diff --git a/packages/manugen-ai/docs/media/manuscript_deadlines.png b/packages/manufold/docs/media/manuscript_deadlines.png similarity index 100% rename from packages/manugen-ai/docs/media/manuscript_deadlines.png rename to packages/manufold/docs/media/manuscript_deadlines.png diff --git a/packages/manugen-ai/docs/media/manuscript_drafter_agent.png b/packages/manufold/docs/media/manuscript_drafter_agent.png similarity index 100% rename from packages/manugen-ai/docs/media/manuscript_drafter_agent.png rename to packages/manufold/docs/media/manuscript_drafter_agent.png diff --git a/packages/manugen-ai/docs/media/repo_agent.png b/packages/manufold/docs/media/repo_agent.png similarity index 100% rename from packages/manugen-ai/docs/media/repo_agent.png rename to packages/manufold/docs/media/repo_agent.png diff --git a/packages/manugen-ai/docs/media/retraction_avoidance_agent.png b/packages/manufold/docs/media/retraction_avoidance_agent.png similarity index 100% rename from packages/manugen-ai/docs/media/retraction_avoidance_agent.png rename to packages/manufold/docs/media/retraction_avoidance_agent.png diff --git a/packages/manugen-ai/docs/media/reviewer_agent.png b/packages/manufold/docs/media/reviewer_agent.png similarity index 100% rename from packages/manugen-ai/docs/media/reviewer_agent.png rename to packages/manufold/docs/media/reviewer_agent.png diff --git a/packages/manugen-ai/docs/media/robot_good_research.png b/packages/manufold/docs/media/robot_good_research.png similarity index 100% rename from packages/manugen-ai/docs/media/robot_good_research.png rename to packages/manufold/docs/media/robot_good_research.png diff --git a/packages/manugen-ai/docs/media/writing_assistance_workflow.png b/packages/manufold/docs/media/writing_assistance_workflow.png similarity index 100% rename from packages/manugen-ai/docs/media/writing_assistance_workflow.png rename to packages/manufold/docs/media/writing_assistance_workflow.png diff --git a/packages/manugen-ai/docs/overview.md b/packages/manufold/docs/overview.md similarity index 100% rename from packages/manugen-ai/docs/overview.md rename to packages/manufold/docs/overview.md diff --git a/packages/manugen-ai/docs/video_script.md b/packages/manufold/docs/video_script.md similarity index 100% rename from packages/manugen-ai/docs/video_script.md rename to packages/manufold/docs/video_script.md diff --git a/packages/manugen-ai/pyproject.toml b/packages/manufold/pyproject.toml similarity index 77% rename from packages/manugen-ai/pyproject.toml rename to packages/manufold/pyproject.toml index e8d4d95..2ef895e 100644 --- a/packages/manugen-ai/pyproject.toml +++ b/packages/manufold/pyproject.toml @@ -3,7 +3,7 @@ build-backend = "hatchling.build" requires = [ "hatchling" ] [project] -name = "manugen-ai" +name = "manufold" version = "0.1.0" description = "" readme = "README.md" @@ -19,7 +19,6 @@ classifiers = [ "Programming Language :: Python :: 3 :: Only", "Programming Language :: Python :: 3.12", ] - dependencies = [ "cyclopts>=3.17,<4", "duckdb>=1.3.1", @@ -39,7 +38,7 @@ dependencies = [ "requests>=2.32.3", "transformers>=4.52.4", ] -scripts.manugen = "manugen_ai.cli:app" +scripts.manugen = "manufold.cli:app" [dependency-groups] dev = [ @@ -53,24 +52,20 @@ dev = [ "pytest-asyncio>=1", ] -[tool.hatch.build.targets.sdist] -include = [ "src/manugen_ai" ] - -[tool.hatch.build.targets.wheel] -include = [ "src/manugen_ai" ] - -[tool.hatch.build.targets.wheel.sources] -"src/manugen_ai" = "manugen_ai" +[tool.hatch] +build.targets.sdist.include = [ "src/manufold" ] +build.targets.wheel.include = [ "src/manufold" ] +build.targets.wheel.sources."src/manufold" = "manufold" -[tool.poe.tasks] +[tool.poe] # create withdrarxiv_embeddings database -create_withdrarxiv_embeddings.shell = """ +tasks.create_withdrarxiv_embeddings.shell = """ python -c \ -"from manugen_ai.data import create_withdrarxiv_embeddings; \ +"from manufold.data import create_withdrarxiv_embeddings; \ create_withdrarxiv_embeddings()" """ # generates diagrams for agent architecture # under docs/media -generate_agent_diagrams.shell = """ +tasks.generate_agent_diagrams.shell = """ python docs/media/generate_diagrams.py """ diff --git a/packages/manugen-ai/src/manugen_ai/__init__.py b/packages/manufold/src/manufold/__init__.py similarity index 100% rename from packages/manugen-ai/src/manugen_ai/__init__.py rename to packages/manufold/src/manufold/__init__.py diff --git a/packages/manugen-ai/src/manugen_ai/adk.py b/packages/manufold/src/manufold/adk.py similarity index 100% rename from packages/manugen-ai/src/manugen_ai/adk.py rename to packages/manufold/src/manufold/adk.py diff --git a/packages/manugen-ai/src/manugen_ai/agents/__init__.py b/packages/manufold/src/manufold/agents/__init__.py similarity index 100% rename from packages/manugen-ai/src/manugen_ai/agents/__init__.py rename to packages/manufold/src/manufold/agents/__init__.py diff --git a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/__init__.py b/packages/manufold/src/manufold/agents/ai_science_writer/__init__.py similarity index 100% rename from packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/__init__.py rename to packages/manufold/src/manufold/agents/ai_science_writer/__init__.py diff --git a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/agent.py b/packages/manufold/src/manufold/agents/ai_science_writer/agent.py similarity index 100% rename from packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/agent.py rename to packages/manufold/src/manufold/agents/ai_science_writer/agent.py diff --git a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/abstract/__init__.py b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/abstract/__init__.py similarity index 100% rename from packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/abstract/__init__.py rename to packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/abstract/__init__.py diff --git a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/abstract/agent.py b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/abstract/agent.py similarity index 81% rename from packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/abstract/agent.py rename to packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/abstract/agent.py index 23257cc..af71991 100644 --- a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/abstract/agent.py +++ b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/abstract/agent.py @@ -1,8 +1,8 @@ import os from google.adk.agents import LlmAgent -from manugen_ai.schema import ABSTRACT_KEY, prepare_instructions -from manugen_ai.utils import get_llm +from manufold.schema import ABSTRACT_KEY, prepare_instructions +from manufold.utils import get_llm from . import prompt diff --git a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/abstract/prompt.py b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/abstract/prompt.py similarity index 100% rename from packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/abstract/prompt.py rename to packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/abstract/prompt.py diff --git a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/assembler/__init__.py b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/assembler/__init__.py similarity index 100% rename from packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/assembler/__init__.py rename to packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/assembler/__init__.py diff --git a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/assembler/agent.py b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/assembler/agent.py similarity index 90% rename from packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/assembler/agent.py rename to packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/assembler/agent.py index 3ae6705..25b6538 100644 --- a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/assembler/agent.py +++ b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/assembler/agent.py @@ -1,13 +1,14 @@ import logging +import os from typing import Optional from google.adk.agents import LlmAgent from google.adk.agents.callback_context import CallbackContext from google.genai import types -from manugen_ai.schema import INSTRUCTIONS_KEY, ManuscriptStructure +from manufold.schema import INSTRUCTIONS_KEY, ManuscriptStructure # --- Configure Logging --- -logging.basicConfig(level=logging.INFO) +logging.basicConfig(level=os.environ.get("LOG_LEVEL", "INFO").upper()) logger = logging.getLogger(__name__) diff --git a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/citations/__init__.py b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/citations/__init__.py similarity index 100% rename from packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/citations/__init__.py rename to packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/citations/__init__.py diff --git a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/citations/agent.py b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/citations/agent.py similarity index 93% rename from packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/citations/agent.py rename to packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/citations/agent.py index 4f509aa..91d78c3 100644 --- a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/citations/agent.py +++ b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/citations/agent.py @@ -9,9 +9,9 @@ from google.adk.agents import Agent, SequentialAgent from google.adk.tools import FunctionTool -from manugen_ai.agents.meta_agent import ResilientToolAgent -from manugen_ai.tools.tools import openalex_query, parse_list -from manugen_ai.utils import get_llm +from manufold.agents.meta_agent import ResilientToolAgent +from manufold.tools.tools import openalex_query, parse_list +from manufold.utils import get_llm MODEL_NAME = os.environ.get("MANUGENAI_MODEL_NAME") LLM = get_llm(MODEL_NAME) diff --git a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/coordinator/__init__.py b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/coordinator/__init__.py similarity index 100% rename from packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/coordinator/__init__.py rename to packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/coordinator/__init__.py diff --git a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/coordinator/agent.py b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/coordinator/agent.py similarity index 95% rename from packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/coordinator/agent.py rename to packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/coordinator/agent.py index c710e6c..101baf8 100644 --- a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/coordinator/agent.py +++ b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/coordinator/agent.py @@ -1,7 +1,7 @@ import os from google.adk.agents import LlmAgent -from manugen_ai.utils import get_llm +from manufold.utils import get_llm from ..citations import root_agent as citation_agent from ..figure import figure_agent diff --git a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/coordinator/custom_agent.py b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/coordinator/custom_agent.py similarity index 79% rename from packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/coordinator/custom_agent.py rename to packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/coordinator/custom_agent.py index 3d841b9..a733e92 100644 --- a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/coordinator/custom_agent.py +++ b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/coordinator/custom_agent.py @@ -1,10 +1,11 @@ import logging +import os from typing import AsyncGenerator, Callable from google.adk.agents import BaseAgent from google.adk.agents.invocation_context import InvocationContext from google.adk.events import Event -from manugen_ai.adk import ManugenAIBaseAgent +from manufold.adk import ManugenAIBaseAgent from typing_extensions import override from ..citations import root_agent as citation_agent @@ -15,7 +16,7 @@ from ..reviewer import root_agent as review_agent # --- Configure Logging --- -logging.basicConfig(level=logging.INFO) +logging.basicConfig(level=os.environ.get("LOG_LEVEL", "INFO").upper()) logger = logging.getLogger(__name__) @@ -96,29 +97,36 @@ async def _run_async_impl( sub_agents_cond=[ ( figure_agent, - lambda user_input: user_input.inline_data is not None - and user_input.inline_data.mime_type is not None - and user_input.inline_data.mime_type.startswith("image/"), + lambda user_input: ( + user_input.inline_data is not None + and user_input.inline_data.mime_type is not None + and user_input.inline_data.mime_type.startswith("image/") + ), ), ( retraction_avoidance_agent, - lambda user_input: user_input.text is not None - and "$RETRACTION_AVOIDANCE_REQUEST$" in user_input.text, + lambda user_input: ( + user_input.text is not None + and "$RETRACTION_AVOIDANCE_REQUEST$" in user_input.text + ), ), ( citation_agent, - lambda user_input: user_input.text is not None - and "$CITATION_REQUEST$" in user_input.text, + lambda user_input: ( + user_input.text is not None and "$CITATION_REQUEST$" in user_input.text + ), ), ( review_agent, - lambda user_input: user_input.text is not None - and "$REFINE_REQUEST$" in user_input.text, + lambda user_input: ( + user_input.text is not None and "$REFINE_REQUEST$" in user_input.text + ), ), ( repo_agent, - lambda user_input: user_input.text is not None - and "$REPO_REQUEST$" in user_input.text, + lambda user_input: ( + user_input.text is not None and "$REPO_REQUEST$" in user_input.text + ), ), ( manuscript_drafter_agent, diff --git a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/coordinator/prompt.py b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/coordinator/prompt.py similarity index 100% rename from packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/coordinator/prompt.py rename to packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/coordinator/prompt.py diff --git a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/discussion/__init__.py b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/discussion/__init__.py similarity index 100% rename from packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/discussion/__init__.py rename to packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/discussion/__init__.py diff --git a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/discussion/agent.py b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/discussion/agent.py similarity index 82% rename from packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/discussion/agent.py rename to packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/discussion/agent.py index 566f26c..a3bf7a3 100644 --- a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/discussion/agent.py +++ b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/discussion/agent.py @@ -1,8 +1,8 @@ import os from google.adk.agents import LlmAgent -from manugen_ai.schema import DISCUSSION_KEY, prepare_instructions -from manugen_ai.utils import get_llm +from manufold.schema import DISCUSSION_KEY, prepare_instructions +from manufold.utils import get_llm from . import prompt diff --git a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/discussion/prompt.py b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/discussion/prompt.py similarity index 100% rename from packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/discussion/prompt.py rename to packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/discussion/prompt.py diff --git a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/figure/__init__.py b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/figure/__init__.py similarity index 100% rename from packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/figure/__init__.py rename to packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/figure/__init__.py diff --git a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/figure/agent.py b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/figure/agent.py similarity index 97% rename from packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/figure/agent.py rename to packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/figure/agent.py index 08a61ed..f71b352 100644 --- a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/figure/agent.py +++ b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/figure/agent.py @@ -10,13 +10,13 @@ from google.adk.agents.callback_context import CallbackContext from google.adk.models import LlmResponse from google.genai import types -from manugen_ai.schema import ( +from manufold.schema import ( CURRENT_FIGURE_KEY, FIGURES_KEY, SingleFigureDescription, prepare_instructions, ) -from manugen_ai.utils import get_llm +from manufold.utils import get_llm from . import prompt diff --git a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/figure/prompt.py b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/figure/prompt.py similarity index 93% rename from packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/figure/prompt.py rename to packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/figure/prompt.py index 6a02909..6809f08 100644 --- a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/figure/prompt.py +++ b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/figure/prompt.py @@ -2,7 +2,7 @@ import json -from manugen_ai.schema import SingleFigureDescription +from manufold.schema import SingleFigureDescription PROMPT = f""" You are an expert in interpreting and describing figures from a scientific article. diff --git a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/interpreter/__init__.py b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/interpreter/__init__.py similarity index 100% rename from packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/interpreter/__init__.py rename to packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/interpreter/__init__.py diff --git a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/interpreter/agent.py b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/interpreter/agent.py similarity index 86% rename from packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/interpreter/agent.py rename to packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/interpreter/agent.py index 2cb3c96..6a78047 100644 --- a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/interpreter/agent.py +++ b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/interpreter/agent.py @@ -1,8 +1,8 @@ import os from google.adk.agents import LlmAgent -from manugen_ai.schema import ManuscriptStructure -from manugen_ai.utils import get_llm +from manufold.schema import ManuscriptStructure +from manufold.utils import get_llm from . import prompt diff --git a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/interpreter/prompt.py b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/interpreter/prompt.py similarity index 96% rename from packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/interpreter/prompt.py rename to packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/interpreter/prompt.py index 68297ab..5c4cbb4 100644 --- a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/interpreter/prompt.py +++ b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/interpreter/prompt.py @@ -2,7 +2,7 @@ import json -from manugen_ai.schema import ManuscriptStructure +from manufold.schema import ManuscriptStructure PROMPT = f""" Your goal is to interpret the user's input below and extract instructions, requests or ideas that are specific diff --git a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/introduction/__init__.py b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/introduction/__init__.py similarity index 100% rename from packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/introduction/__init__.py rename to packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/introduction/__init__.py diff --git a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/introduction/agent.py b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/introduction/agent.py similarity index 82% rename from packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/introduction/agent.py rename to packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/introduction/agent.py index 63d307a..99c5ecb 100644 --- a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/introduction/agent.py +++ b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/introduction/agent.py @@ -1,8 +1,8 @@ import os from google.adk.agents import LlmAgent -from manugen_ai.schema import INTRODUCTION_KEY, prepare_instructions -from manugen_ai.utils import get_llm +from manufold.schema import INTRODUCTION_KEY, prepare_instructions +from manufold.utils import get_llm from . import prompt diff --git a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/introduction/prompt.py b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/introduction/prompt.py similarity index 100% rename from packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/introduction/prompt.py rename to packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/introduction/prompt.py diff --git a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/manuscript_drafter/__init__.py b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/manuscript_drafter/__init__.py similarity index 100% rename from packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/manuscript_drafter/__init__.py rename to packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/manuscript_drafter/__init__.py diff --git a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/manuscript_drafter/agent.py b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/manuscript_drafter/agent.py similarity index 93% rename from packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/manuscript_drafter/agent.py rename to packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/manuscript_drafter/agent.py index 1d7b394..050e394 100644 --- a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/manuscript_drafter/agent.py +++ b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/manuscript_drafter/agent.py @@ -1,17 +1,18 @@ import logging +import os from typing import AsyncGenerator from google.adk.agents import SequentialAgent from google.adk.agents.invocation_context import InvocationContext from google.adk.events import Event -from manugen_ai.adk import ManugenAIBaseAgent +from manufold.adk import ManugenAIBaseAgent from typing_extensions import override from ..interpreter import request_interpreter_agent from ..section_drafter import section_drafter_agent # --- Configure Logging --- -logging.basicConfig(level=logging.INFO) +logging.basicConfig(level=os.environ.get("LOG_LEVEL", "INFO").upper()) logger = logging.getLogger(__name__) diff --git a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/methods/__init__.py b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/methods/__init__.py similarity index 100% rename from packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/methods/__init__.py rename to packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/methods/__init__.py diff --git a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/methods/agent.py b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/methods/agent.py similarity index 77% rename from packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/methods/agent.py rename to packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/methods/agent.py index 52c3103..8f7442d 100644 --- a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/methods/agent.py +++ b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/methods/agent.py @@ -1,9 +1,9 @@ import os from google.adk.agents import LlmAgent -from manugen_ai.schema import METHODS_KEY, prepare_instructions -from manugen_ai.tools.tools import fetch_url -from manugen_ai.utils import get_llm +from manufold.schema import METHODS_KEY, prepare_instructions +from manufold.tools.tools import fetch_url +from manufold.utils import get_llm from . import prompt diff --git a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/methods/prompt.py b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/methods/prompt.py similarity index 100% rename from packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/methods/prompt.py rename to packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/methods/prompt.py diff --git a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/repo_to_paper/__init__.py b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/repo_to_paper/__init__.py similarity index 100% rename from packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/repo_to_paper/__init__.py rename to packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/repo_to_paper/__init__.py diff --git a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/repo_to_paper/agent.py b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/repo_to_paper/agent.py similarity index 97% rename from packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/repo_to_paper/agent.py rename to packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/repo_to_paper/agent.py index cc33178..317b955 100644 --- a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/repo_to_paper/agent.py +++ b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/repo_to_paper/agent.py @@ -13,8 +13,8 @@ SequentialAgent, ) from google.adk.tools import FunctionTool -from manugen_ai.tools.tools import clone_repository, read_path_contents -from manugen_ai.utils import get_llm +from manufold.tools.tools import clone_repository, read_path_contents +from manufold.utils import get_llm MODEL_NAME = os.environ.get("MANUGENAI_MODEL_NAME") LLM = get_llm(MODEL_NAME) diff --git a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/results/__init__.py b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/results/__init__.py similarity index 100% rename from packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/results/__init__.py rename to packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/results/__init__.py diff --git a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/results/agent.py b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/results/agent.py similarity index 88% rename from packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/results/agent.py rename to packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/results/agent.py index d3aca6d..a156367 100644 --- a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/results/agent.py +++ b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/results/agent.py @@ -1,8 +1,8 @@ import os from google.adk.agents import LlmAgent -from manugen_ai.schema import RESULTS_KEY, prepare_instructions -from manugen_ai.utils import get_llm +from manufold.schema import RESULTS_KEY, prepare_instructions +from manufold.utils import get_llm from . import prompt diff --git a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/results/prompt.py b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/results/prompt.py similarity index 100% rename from packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/results/prompt.py rename to packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/results/prompt.py diff --git a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/retraction_avoidance/__init__.py b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/retraction_avoidance/__init__.py similarity index 100% rename from packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/retraction_avoidance/__init__.py rename to packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/retraction_avoidance/__init__.py diff --git a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/retraction_avoidance/agent.py b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/retraction_avoidance/agent.py similarity index 94% rename from packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/retraction_avoidance/agent.py rename to packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/retraction_avoidance/agent.py index b92ef2e..1c34c3c 100644 --- a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/retraction_avoidance/agent.py +++ b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/retraction_avoidance/agent.py @@ -14,10 +14,10 @@ from google.adk.agents import Agent, LoopAgent, SequentialAgent from google.adk.tools import FunctionTool -from manugen_ai.agents.meta_agent import ResilientToolAgent -from manugen_ai.data import search_withdrarxiv_embeddings -from manugen_ai.tools.tools import openalex_query, parse_list -from manugen_ai.utils import get_llm +from manufold.agents.meta_agent import ResilientToolAgent +from manufold.data import search_withdrarxiv_embeddings +from manufold.tools.tools import openalex_query, parse_list +from manufold.utils import get_llm MODEL_NAME = os.environ.get("MANUGENAI_MODEL_NAME") LLM = get_llm(MODEL_NAME) diff --git a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/reviewer/__init__.py b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/reviewer/__init__.py similarity index 100% rename from packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/reviewer/__init__.py rename to packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/reviewer/__init__.py diff --git a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/reviewer/agent.py b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/reviewer/agent.py similarity index 92% rename from packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/reviewer/agent.py rename to packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/reviewer/agent.py index d96629a..60124f3 100644 --- a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/reviewer/agent.py +++ b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/reviewer/agent.py @@ -6,9 +6,9 @@ from google.adk.agents import Agent, LoopAgent from google.adk.tools import FunctionTool -from manugen_ai.agents.meta_agent import ResilientToolAgent -from manugen_ai.tools.tools import exit_loop -from manugen_ai.utils import get_llm +from manufold.agents.meta_agent import ResilientToolAgent +from manufold.tools.tools import exit_loop +from manufold.utils import get_llm # Environment-driven model names MODEL_NAME = os.environ.get("MANUGENAI_MODEL_NAME") diff --git a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/section_drafter/__init__.py b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/section_drafter/__init__.py similarity index 100% rename from packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/section_drafter/__init__.py rename to packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/section_drafter/__init__.py diff --git a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/section_drafter/agent.py b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/section_drafter/agent.py similarity index 96% rename from packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/section_drafter/agent.py rename to packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/section_drafter/agent.py index 2d4791a..b7a6e93 100644 --- a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/section_drafter/agent.py +++ b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/section_drafter/agent.py @@ -1,11 +1,12 @@ import logging +import os from typing import AsyncGenerator from google.adk.agents import LlmAgent from google.adk.agents.invocation_context import InvocationContext from google.adk.events import Event -from manugen_ai.adk import ManugenAIBaseAgent -from manugen_ai.schema import ( +from manufold.adk import ManugenAIBaseAgent +from manufold.schema import ( INSTRUCTIONS_KEY, ) from typing_extensions import override @@ -18,7 +19,7 @@ from ..title import title_agent # --- Configure Logging --- -logging.basicConfig(level=logging.INFO) +logging.basicConfig(level=os.environ.get("LOG_LEVEL", "INFO").upper()) logger = logging.getLogger(__name__) diff --git a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/title/__init__.py b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/title/__init__.py similarity index 100% rename from packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/title/__init__.py rename to packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/title/__init__.py diff --git a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/title/agent.py b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/title/agent.py similarity index 89% rename from packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/title/agent.py rename to packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/title/agent.py index 9787b17..c30f5d9 100644 --- a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/title/agent.py +++ b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/title/agent.py @@ -1,8 +1,8 @@ import os from google.adk.agents import LlmAgent -from manugen_ai.schema import prepare_instructions -from manugen_ai.utils import get_llm +from manufold.schema import prepare_instructions +from manufold.utils import get_llm from . import prompt diff --git a/packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/title/prompt.py b/packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/title/prompt.py similarity index 100% rename from packages/manugen-ai/src/manugen_ai/agents/ai_science_writer/sub_agents/title/prompt.py rename to packages/manufold/src/manufold/agents/ai_science_writer/sub_agents/title/prompt.py diff --git a/packages/manugen-ai/src/manugen_ai/agents/capitalizer/agent.py b/packages/manufold/src/manufold/agents/capitalizer/agent.py similarity index 100% rename from packages/manugen-ai/src/manugen_ai/agents/capitalizer/agent.py rename to packages/manufold/src/manufold/agents/capitalizer/agent.py diff --git a/packages/manugen-ai/src/manugen_ai/agents/markdown_outline_to_paper/agent.py b/packages/manufold/src/manufold/agents/markdown_outline_to_paper/agent.py similarity index 97% rename from packages/manugen-ai/src/manugen_ai/agents/markdown_outline_to_paper/agent.py rename to packages/manufold/src/manufold/agents/markdown_outline_to_paper/agent.py index d5ca9a1..51acbb0 100644 --- a/packages/manugen-ai/src/manugen_ai/agents/markdown_outline_to_paper/agent.py +++ b/packages/manufold/src/manufold/agents/markdown_outline_to_paper/agent.py @@ -12,13 +12,13 @@ from google.adk.agents import Agent, LoopAgent, ParallelAgent, SequentialAgent from google.adk.models.lite_llm import LiteLlm from google.adk.tools import FunctionTool -from manugen_ai.agents.meta_agent import ( +from manufold.agents.meta_agent import ( ResilientToolAgent, SectionWriterAgent, StopChecker, ) -from manugen_ai.tools.tools import exit_loop, fetch_url, json_conforms_to_schema -from manugen_ai.utils import prepare_ollama_models_for_adk_state +from manufold.tools.tools import exit_loop, fetch_url, json_conforms_to_schema +from manufold.utils import prepare_ollama_models_for_adk_state # Preconfigure Ollama models for ADK prepare_ollama_models_for_adk_state() diff --git a/packages/manugen-ai/src/manugen_ai/agents/meta_agent.py b/packages/manufold/src/manufold/agents/meta_agent.py similarity index 100% rename from packages/manugen-ai/src/manugen_ai/agents/meta_agent.py rename to packages/manufold/src/manufold/agents/meta_agent.py diff --git a/packages/manugen-ai/src/manugen_ai/agents/weather/__init__.py b/packages/manufold/src/manufold/agents/weather/__init__.py similarity index 100% rename from packages/manugen-ai/src/manugen_ai/agents/weather/__init__.py rename to packages/manufold/src/manufold/agents/weather/__init__.py diff --git a/packages/manugen-ai/src/manugen_ai/agents/weather/agent.py b/packages/manufold/src/manufold/agents/weather/agent.py similarity index 100% rename from packages/manugen-ai/src/manugen_ai/agents/weather/agent.py rename to packages/manufold/src/manufold/agents/weather/agent.py diff --git a/packages/manugen-ai/src/manugen_ai/cli.py b/packages/manufold/src/manufold/cli.py similarity index 100% rename from packages/manugen-ai/src/manugen_ai/cli.py rename to packages/manufold/src/manufold/cli.py diff --git a/packages/manugen-ai/src/manugen_ai/data.py b/packages/manufold/src/manufold/data.py similarity index 98% rename from packages/manugen-ai/src/manugen_ai/data.py rename to packages/manufold/src/manufold/data.py index 76a6a6c..4037148 100644 --- a/packages/manugen-ai/src/manugen_ai/data.py +++ b/packages/manufold/src/manufold/data.py @@ -9,7 +9,7 @@ import numpy as np import pyarrow as pa -from manugen_ai.utils import download_file_if_not_available +from manufold.utils import download_file_if_not_available # if USE_GEMINI_EMBEDDINGS is 1, we'll use Google's GenAI API for embeddings, # otherwise we'll use the FlagEmbedding model (BAAI/bge-m3) @@ -214,7 +214,7 @@ def create_withdrarxiv_embeddings( Args: target_db (str, optional): Path to the DuckDB database where embeddings will be stored. Defaults to - "src/manugen_ai/data/withdrarxiv_embeddings.duckdb". + "src/manufold/data/withdrarxiv_embeddings.duckdb". Returns: str: The path to the DuckDB database containing the paper metadata diff --git a/packages/manugen-ai/src/manugen_ai/schema.py b/packages/manufold/src/manufold/schema.py similarity index 100% rename from packages/manugen-ai/src/manugen_ai/schema.py rename to packages/manufold/src/manufold/schema.py diff --git a/packages/manugen-ai/src/manugen_ai/tools/tools.py b/packages/manufold/src/manufold/tools/tools.py similarity index 98% rename from packages/manugen-ai/src/manugen_ai/tools/tools.py rename to packages/manufold/src/manufold/tools/tools.py index f1508ec..ea67895 100644 --- a/packages/manugen-ai/src/manugen_ai/tools/tools.py +++ b/packages/manufold/src/manufold/tools/tools.py @@ -1,5 +1,5 @@ """ -Tools for agents within manugen-ai +Tools for agents within manufold """ from __future__ import annotations @@ -13,7 +13,7 @@ import requests from google.adk.tools.tool_context import ToolContext from jsonschema import ValidationError, validate -from manugen_ai.utils import graceful_fail +from manufold.utils import graceful_fail from pyalex import Works diff --git a/packages/manugen-ai/src/manugen_ai/utils.py b/packages/manufold/src/manufold/utils.py similarity index 99% rename from packages/manugen-ai/src/manugen_ai/utils.py rename to packages/manufold/src/manufold/utils.py index 2fc1384..79968d8 100644 --- a/packages/manugen-ai/src/manugen_ai/utils.py +++ b/packages/manufold/src/manufold/utils.py @@ -1,5 +1,5 @@ """ -Utils for manugen-ai +Utils for manufold """ from __future__ import annotations diff --git a/packages/manugen-ai/tests/__init__.py b/packages/manufold/tests/__init__.py similarity index 100% rename from packages/manugen-ai/tests/__init__.py rename to packages/manufold/tests/__init__.py diff --git a/packages/manugen-ai/tests/conftest.py b/packages/manufold/tests/conftest.py similarity index 100% rename from packages/manugen-ai/tests/conftest.py rename to packages/manufold/tests/conftest.py diff --git a/packages/manugen-ai/tests/reports/enhance_to_avoid_retraction_reasons.ipynb b/packages/manufold/tests/reports/enhance_to_avoid_retraction_reasons.ipynb similarity index 99% rename from packages/manugen-ai/tests/reports/enhance_to_avoid_retraction_reasons.ipynb rename to packages/manufold/tests/reports/enhance_to_avoid_retraction_reasons.ipynb index a257fb6..6aedba1 100644 --- a/packages/manugen-ai/tests/reports/enhance_to_avoid_retraction_reasons.ipynb +++ b/packages/manufold/tests/reports/enhance_to_avoid_retraction_reasons.ipynb @@ -37,8 +37,8 @@ ], "source": [ "from IPython.display import Image, display\n", - "from manugen_ai.agents.enhance_to_avoid_retraction_reasons.agent import root_agent\n", - "from manugen_ai.utils import build_mermaid, run_agent_workflow" + "from manufold.agents.enhance_to_avoid_retraction_reasons.agent import root_agent\n", + "from manufold.utils import build_mermaid, run_agent_workflow" ] }, { diff --git a/packages/manugen-ai/tests/reports/enhance_with_related_work.ipynb b/packages/manufold/tests/reports/enhance_with_related_work.ipynb similarity index 99% rename from packages/manugen-ai/tests/reports/enhance_with_related_work.ipynb rename to packages/manufold/tests/reports/enhance_with_related_work.ipynb index c696dcd..95bb6bf 100644 --- a/packages/manugen-ai/tests/reports/enhance_with_related_work.ipynb +++ b/packages/manufold/tests/reports/enhance_with_related_work.ipynb @@ -22,8 +22,8 @@ "outputs": [], "source": [ "from IPython.display import Image, display\n", - "from manugen_ai.agents.enhance_with_related_work.agent import root_agent\n", - "from manugen_ai.utils import build_mermaid, run_agent_workflow" + "from manufold.agents.enhance_with_related_work.agent import root_agent\n", + "from manufold.utils import build_mermaid, run_agent_workflow" ] }, { diff --git a/packages/manugen-ai/tests/reports/markdown_outline_to_paper.ipynb b/packages/manufold/tests/reports/markdown_outline_to_paper.ipynb similarity index 99% rename from packages/manugen-ai/tests/reports/markdown_outline_to_paper.ipynb rename to packages/manufold/tests/reports/markdown_outline_to_paper.ipynb index ce2ea53..25bcbc1 100644 --- a/packages/manugen-ai/tests/reports/markdown_outline_to_paper.ipynb +++ b/packages/manufold/tests/reports/markdown_outline_to_paper.ipynb @@ -22,8 +22,8 @@ "outputs": [], "source": [ "from IPython.display import Image, display\n", - "from manugen_ai.agents.markdown_outline_to_paper.agent import root_agent\n", - "from manugen_ai.utils import build_mermaid, run_agent_workflow" + "from manufold.agents.markdown_outline_to_paper.agent import root_agent\n", + "from manufold.utils import build_mermaid, run_agent_workflow" ] }, { diff --git a/packages/manugen-ai/tests/reports/mermaid_diagrams_for_agents.ipynb b/packages/manufold/tests/reports/mermaid_diagrams_for_agents.ipynb similarity index 99% rename from packages/manugen-ai/tests/reports/mermaid_diagrams_for_agents.ipynb rename to packages/manufold/tests/reports/mermaid_diagrams_for_agents.ipynb index 95f6ce7..8054a08 100644 --- a/packages/manugen-ai/tests/reports/mermaid_diagrams_for_agents.ipynb +++ b/packages/manufold/tests/reports/mermaid_diagrams_for_agents.ipynb @@ -21,7 +21,7 @@ "source": [ "from google.adk.agents import Agent, LlmAgent, LoopAgent, ParallelAgent, SequentialAgent\n", "from IPython.display import Image, display\n", - "from manugen_ai.utils import build_mermaid" + "from manufold.utils import build_mermaid" ] }, { diff --git a/packages/manugen-ai/tests/test_agents.py b/packages/manufold/tests/test_agents.py similarity index 89% rename from packages/manugen-ai/tests/test_agents.py rename to packages/manufold/tests/test_agents.py index cd5f473..9383bf3 100644 --- a/packages/manugen-ai/tests/test_agents.py +++ b/packages/manufold/tests/test_agents.py @@ -3,8 +3,8 @@ """ import pytest -from manugen_ai.agents.capitalizer.agent import root_agent -from manugen_ai.utils import run_agent_workflow +from manufold.agents.capitalizer.agent import root_agent +from manufold.utils import run_agent_workflow @pytest.mark.asyncio diff --git a/packages/manugen-ai/tests/test_meta_agent.py b/packages/manufold/tests/test_meta_agent.py similarity index 96% rename from packages/manugen-ai/tests/test_meta_agent.py rename to packages/manufold/tests/test_meta_agent.py index d2a5a84..dcf0c8e 100644 --- a/packages/manugen-ai/tests/test_meta_agent.py +++ b/packages/manufold/tests/test_meta_agent.py @@ -7,8 +7,8 @@ import pytest from google.adk.agents import Agent, LoopAgent from google.adk.models.lite_llm import LiteLlm -from manugen_ai.agents.meta_agent import ResilientToolAgent, StopChecker -from manugen_ai.utils import prepare_ollama_models_for_adk_state, run_agent_workflow +from manufold.agents.meta_agent import ResilientToolAgent, StopChecker +from manufold.utils import prepare_ollama_models_for_adk_state, run_agent_workflow @pytest.mark.asyncio diff --git a/packages/manugen-ai/tests/test_tools.py b/packages/manufold/tests/test_tools.py similarity index 99% rename from packages/manugen-ai/tests/test_tools.py rename to packages/manufold/tests/test_tools.py index c5c7ba0..b97c7dd 100644 --- a/packages/manugen-ai/tests/test_tools.py +++ b/packages/manufold/tests/test_tools.py @@ -3,7 +3,7 @@ import pygit2 import pytest -from manugen_ai.tools.tools import ( +from manufold.tools.tools import ( clone_repository, exit_loop, fetch_url, diff --git a/packages/manugen-ai/tests/utils.py b/packages/manufold/tests/utils.py similarity index 100% rename from packages/manugen-ai/tests/utils.py rename to packages/manufold/tests/utils.py diff --git a/packages/manugen-ai/uv.lock b/packages/manufold/uv.lock similarity index 99% rename from packages/manugen-ai/uv.lock rename to packages/manufold/uv.lock index 68c7254..ed3a1d1 100644 --- a/packages/manugen-ai/uv.lock +++ b/packages/manufold/uv.lock @@ -1677,7 +1677,7 @@ wheels = [ ] [[package]] -name = "manugen-ai" +name = "manufold" version = "0.1.0" source = { editable = "." } dependencies = [