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change to correct author format (#5)
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‎example_files/cchfv_test_metadata.tsv

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ampliconPcrPrimerScheme ampliconSize anatomicalMaterial anatomicalPart authorAffiliations authors bodyProduct breadthOfCoverage cellLine collectionDevice collectionMethod consensusSequenceSoftwareName consensusSequenceSoftwareVersion cultureId dehostingMethod depthOfCoverage diagnostic_measurement_method diagnosticMeasurementUnit diagnosticMeasurementValue diagnosticTargetGeneName diagnosticTargetPresence environmentalMaterial environmentalSite experimentalSpecimenRoleType exposureDetails exposureEvent exposureSetting foodProduct foodProductProperties geoLocAdmin1 geoLocAdmin2 geoLocCity geoLocCountry geoLocSite hostAge hostAgeBin hostDisease hostGender hostHealthOutcome hostHealthState hostNameCommon hostNameScientific hostOriginCountry hostRole hostTaxonId hostVaccinationStatus passageMethod passageNumber presamplingActivity previousInfectionDisease previousInfectionOrganism purposeOfSampling purposeOfSequencing qualityControlDetails qualityControlDetermination qualityControlIssues qualityControlMethodName qualityControlMethodVersion rawSequenceDataProcessingMethod referenceGenomeAccession sampleCollectionDate sampleReceivedDate sampleType sequencedByContactEmail sequencedByContactName sequencedByOrganization sequencingAssayType sequencingDate sequencingInstrument sequencingProtocol signsAndSymptoms specimenCollectorSampleId specimenProcessing specimenProcessingDetails bioprojectAccessions submissionId travelHistory versionComment
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"National Institute of Health, Department of Virology" "M. Ammar, M. Salman, M. Umair, Q. Ali, R. Hakim, S.A. Haider, Z. Jamal" Hogwarts Pakistan Homo sapiens 9606 2023-08-26 CCHF/NIHPAK-19/2023 test_NIHPAK-19 "OR964915.1,OR964926.1,OR964937.1"
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"National Institute of Health, Department of Virology" "Ammar, M.; Salman, M.; Umair, M.; Ali, Q.; Hakim, R.; Haider, S.A.; Jamal, Z." Hogwarts Pakistan Homo sapiens 9606 2023-08-26 CCHF/NIHPAK-19/2023 test_NIHPAK-19 "OR964915.1,OR964926.1,OR964937.1"

‎example_files/ebola_zaire_metadata.tsv

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submissionId versionComment sampleCollectionDate region geoLocCountry geoLocAdmin1 geoLocCity geoLocAdmin2 db authors
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test_G5016.1 KR105293 2014-08-16 Subsaharan Africa Sierra Leone Kenema Kenema Hogwarts genbank Goba et al
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test_EM_080193 KR817239 2014-06-29 Subsaharan Africa Liberia Liberia Liberia Hogwarts genbank Carroll et al
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test_EM_074351 KR817110 2014-07-22 Subsaharan Africa Liberia Lofa Lofa Hogwarts genbank Carroll et al
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test_LIBR10253 KT725282 2014-09-16 Subsaharan Africa Liberia Margibi Margibi Hogwarts genbank Ladner et al
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test_G3848 KM233110 2014-06-18 Subsaharan Africa Sierra Leone Kailahun Kailahun Hogwarts genbank Gire et al
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test_EM_000027 KR817068 2014-09-01 Subsaharan Africa Guinea Guinea Guinea Hogwarts genbank Carroll et al
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test_LIBR10047 KT725345 2014-10-01 Subsaharan Africa Liberia Margibi Margibi Hogwarts genbank Ladner et al
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test_G4350.1 KR105242 2014-07-14 Subsaharan Africa Sierra Leone Kenema Kenema Hogwarts genbank Goba et al
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test_J0165 KP759703 2014-11-08 Subsaharan Africa Sierra Leone Western Urban Western Urban Hogwarts genbank Tong et al
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test_G3926.2 KR105208 2014-06-22 Subsaharan Africa Sierra Leone Kailahun Kailahun Hogwarts genbank Goba et al
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test_EM_080223 KR817241 2014-07-04 Subsaharan Africa Liberia Liberia Liberia Hogwarts genbank Carroll et al
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test_G4345.1 KR105239 2014-07-18 Subsaharan Africa Sierra Leone Kenema Kenema Hogwarts genbank Goba et al
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test_LIBR10218 KT725284 2014-09-29 Subsaharan Africa Liberia Liberia Liberia Hogwarts genbank Ladner et al
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test_G3807 KM233084 2014-06-15 Subsaharan Africa Sierra Leone Kailahun Kailahun Hogwarts genbank Gire et al
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test_LIBR10224 KT725302 2014-09-26 Subsaharan Africa Liberia Montserrado Montserrado Hogwarts genbank Ladner et al
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test_13031_EMLH KU296665 2015-05-18 Subsaharan Africa Sierra Leone Western Urban Western Urban Hogwarts genbank Arias et al
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test_G5996.1 KR105337 2014-09-25 Subsaharan Africa Sierra Leone Sierra Leone Sierra Leone Hogwarts genbank Goba et al
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test_DML24708 KT357845 2015-01-28 Subsaharan Africa Sierra Leone Kono Kono Hogwarts genbank Smits et al
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test_15686_EMLK KU296555 2015-06-30 Subsaharan Africa Sierra Leone Kambia Kambia Hogwarts genbank Arias et al
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test_EM_COY_2015_016617 EM_COY_2015_016617 2015-05-16 Subsaharan Africa Guinea Dubreka Dubreka Hogwarts minion Quick et al
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test_Makona-UK3 KR025228 2015-03-12 Subsaharan Africa Sierra Leone Western Area Western Area Hogwarts genbank Lewandowski et al
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test_EM_000968 KR817085 2014-10-01 Subsaharan Africa Guinea Macenta Macenta Hogwarts genbank Carroll et al
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test_490_EMLH KU296746 2015-01-30 Subsaharan Africa Sierra Leone Sierra Leone Sierra Leone Hogwarts genbank Arias et al
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test_PL4696 KU296513 2015-03-13 Subsaharan Africa Sierra Leone Port Loko Port Loko Hogwarts genbank Arias et al
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test_MK2788 KU296573 2015-03-07 Subsaharan Africa Sierra Leone Bombali Bombali Hogwarts genbank Arias et al
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test_LIBR10110 KT725387 2014-08-20 Subsaharan Africa Liberia Liberia Liberia Hogwarts genbank Ladner et al
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test_J0102 KP759657 2014-10-27 Subsaharan Africa Sierra Leone Port Loko Port Loko Hogwarts genbank Tong et al
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test_18636_EMLH KU296460 2015-07-08 Subsaharan Africa Sierra Leone Sierra Leone Sierra Leone Hogwarts genbank Arias et al
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test_V768 KR534588 2014-08-27 Subsaharan Africa Guinea Conakry Conakry Hogwarts genbank Simon-Loriere et al
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test_G5016.1 KR105293 2014-08-16 Subsaharan Africa Sierra Leone Kenema Kenema Hogwarts genbank Goba, A.
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test_EM_080193 KR817239 2014-06-29 Subsaharan Africa Liberia Liberia Liberia Hogwarts genbank Carroll,
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test_EM_074351 KR817110 2014-07-22 Subsaharan Africa Liberia Lofa Lofa Hogwarts genbank Carroll,
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test_LIBR10253 KT725282 2014-09-16 Subsaharan Africa Liberia Margibi Margibi Hogwarts genbank Ladner, B.
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test_G3848 KM233110 2014-06-18 Subsaharan Africa Sierra Leone Kailahun Kailahun Hogwarts genbank Gire, C.
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test_EM_000027 KR817068 2014-09-01 Subsaharan Africa Guinea Guinea Guinea Hogwarts genbank Carroll,
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test_LIBR10047 KT725345 2014-10-01 Subsaharan Africa Liberia Margibi Margibi Hogwarts genbank Ladner, B.
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test_G4350.1 KR105242 2014-07-14 Subsaharan Africa Sierra Leone Kenema Kenema Hogwarts genbank Goba, A.
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test_J0165 KP759703 2014-11-08 Subsaharan Africa Sierra Leone Western Urban Western Urban Hogwarts genbank Tong, D.
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test_G3926.2 KR105208 2014-06-22 Subsaharan Africa Sierra Leone Kailahun Kailahun Hogwarts genbank Goba, A.
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test_EM_080223 KR817241 2014-07-04 Subsaharan Africa Liberia Liberia Liberia Hogwarts genbank Carroll,
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test_G4345.1 KR105239 2014-07-18 Subsaharan Africa Sierra Leone Kenema Kenema Hogwarts genbank Goba, A.
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test_LIBR10218 KT725284 2014-09-29 Subsaharan Africa Liberia Liberia Liberia Hogwarts genbank Ladner, B.
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test_G3807 KM233084 2014-06-15 Subsaharan Africa Sierra Leone Kailahun Kailahun Hogwarts genbank Gire, C.
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test_LIBR10224 KT725302 2014-09-26 Subsaharan Africa Liberia Montserrado Montserrado Hogwarts genbank Ladner, B.
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test_13031_EMLH KU296665 2015-05-18 Subsaharan Africa Sierra Leone Western Urban Western Urban Hogwarts genbank Arias, E.
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test_G5996.1 KR105337 2014-09-25 Subsaharan Africa Sierra Leone Sierra Leone Sierra Leone Hogwarts genbank Goba, A.
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test_DML24708 KT357845 2015-01-28 Subsaharan Africa Sierra Leone Kono Kono Hogwarts genbank Smits, F.
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test_15686_EMLK KU296555 2015-06-30 Subsaharan Africa Sierra Leone Kambia Kambia Hogwarts genbank Arias, E.
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test_EM_COY_2015_016617 EM_COY_2015_016617 2015-05-16 Subsaharan Africa Guinea Dubreka Dubreka Hogwarts minion Quick, G.
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test_Makona-UK3 KR025228 2015-03-12 Subsaharan Africa Sierra Leone Western Area Western Area Hogwarts genbank Lewandowski, H.I.
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test_EM_000968 KR817085 2014-10-01 Subsaharan Africa Guinea Macenta Macenta Hogwarts genbank Carroll,
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test_490_EMLH KU296746 2015-01-30 Subsaharan Africa Sierra Leone Sierra Leone Sierra Leone Hogwarts genbank Arias, E.
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test_PL4696 KU296513 2015-03-13 Subsaharan Africa Sierra Leone Port Loko Port Loko Hogwarts genbank Arias, E.
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test_MK2788 KU296573 2015-03-07 Subsaharan Africa Sierra Leone Bombali Bombali Hogwarts genbank Arias, E.
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test_LIBR10110 KT725387 2014-08-20 Subsaharan Africa Liberia Liberia Liberia Hogwarts genbank Ladner, B.
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test_J0102 KP759657 2014-10-27 Subsaharan Africa Sierra Leone Port Loko Port Loko Hogwarts genbank Tong, D.
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test_18636_EMLH KU296460 2015-07-08 Subsaharan Africa Sierra Leone Sierra Leone Sierra Leone Hogwarts genbank Arias, E.
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test_V768 KR534588 2014-08-27 Subsaharan Africa Guinea Conakry Conakry Hogwarts genbank Simon-Loriere, J.

‎example_files/west_nile_metadata.tsv

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submissionId versionComment authors authorAffiliations specimenCollectorSampleId Geo_Location geoLocCountry geoLocAdmin1 geoLocAdmin2 geoLocCity hostNameScientific anatomicalMaterial sampleCollectionDate
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test_INYO_2_2011 KR348976 "Duggal,N.K., Reisen,W.K., Fang,Y., Newman,R.M., Yang,X., Ebel,G.D., Brault,A.C., Brault,A." "Centers for Disease Control and Prevention, Division of Vector-Borne Infectious Diseases" INYO_2_2011 USA Hogwarts Culex tarsalis 2011-07-18
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test_WNV/mosquito/Bakersfield_CA_USA/2010-07-08/W417 MH508004 "Grubaugh,N., Fang,Y., Matteson,N.L., Gangavarapu,K., Coffey,L., Barker,C., Andersen,K." "The Scripps Research Institute, Department of Immunology and Microbiology" "USA: Bakersfield,California" USA California Hogwarts Bakersfield Culex quinquefasciatus pooled insects 2010-07-08
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test_WNV/mosquito/Larimer-CO-USA/2016-06-27/W1819 OQ721426 "Grubaugh,N., Matteson,N., Gangavarupa,K., Ebel,G., Murrieta,R., Fauver,J., Young,M., Andersen,K." "The Scripps Research Institute, Department of Immunology and Microbiology" "USA: Larimer, Colorado" USA Colorado Hogwarts Larimer Culex tarsalis pooled insects 2016-06-27
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test_AVA1305539 MF175822 "Aroh,C., D'Anton,M., Liang,C., Raj,P., Wakeland,B., Yan,N., Wakeland,E." "UT Southwestern Medical Center, Department of Immunology" AVA1305539 USA: Dallas Co. TX USA texas Hogwarts Dallas Co Culex quinquefasciatus 2013-08-20
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test_WNV/mosquito/Polk-IA-USA/2017-07-17/W1959 OQ721462 "Grubaugh,N., Matteson,N., Gangavarupa,K., Smith,R., Andersen,K." "The Scripps Research Institute, Department of Immunology and Microbiology" "USA: Polk, Iowa" USA Iowa Hogwarts Polk Culex restuans pooled insects 2017-07-17
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test_WNV/mosquito/San_Diego_CA_USA/2014-10-31/W014 MH507621 "Grubaugh,N., Grewal,S., Matteson,N.L., Gangavarapu,K., Gurfield,N., Andersen,K." "The Scripps Research Institute, Department of Immunology and Microbiology" "USA: San_Diego,California" USA California Hogwarts San Diego Culex quinquefasciatus pooled insects 2014-10-31
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test_WNV/bird/Valley_Center_CA_USA/2008-09-18/W037 MH507637 "Grubaugh,N., Grewal,S., Matteson,N.L., Gangavarapu,K., Gurfield,N., Andersen,K." "The Scripps Research Institute, Department of Immunology and Microbiology" "USA: Valley_Center,California" USA California Hogwarts Valey Center Corvus brachyrhynchos tissue 2008-09-18
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test_WNV-1/Cyanocitta cristata /USA/03003243/2003 KX547593 "Shabman,R., Das,S.R., Halpin,R.A., Shilts,M., Fedorova,N., Puri,V., Amedeo,P., Shrivastava,S., Maffei,J., Dupuis,A., Jones,S., Backenson,B., Zink,S., Ciota,A., Kramer,L." J. Craig Venter Institute "USA: Washington Co., NY" USA New York Hogwarts Washington Co Cyanocitta cristata 2003-09-28
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test_WNV/mosquito/Parlier_CA_USA/2010-08-12/W188 MH507768 "Grubaugh,N., Fang,Y., Matteson,N.L., Gangavarapu,K., Coffey,L., Barker,C., Andersen,K." "The Scripps Research Institute, Department of Immunology and Microbiology" "USA: Parlier,California" USA California Hogwarts Parlier Culex tarsalis pooled insects 2010-08-12
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test_WNV/mosquito/Yolo-CA-USA/2015-07-16/W0706 OQ721464 "Grubaugh,N., Matteson,N., Gangavarupa,K., Barker,C., Wheeler,S., Fang,Y., Coffey,L., Reisen,W., Andersen,K." "The Scripps Research Institute, Department of Immunology and Microbiology" "USA: Yolo, California" USA California Hogwarts Yolo Culex tarsalis pooled insects 2015-07-16
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test_AZ10-91 KF704147 "Plante,J.A., Burkhalter,K.L., Mann,B.R., Godsey,M.S. Jr., Mutebi,J.P., Beasley,D.W., Mutebi,J.-P." Centers for Disease Control and Prevention "USA: Glendale, Maricopa Co., AZ" USA Arizona Hogwarts Glendale Culex quinquefasciatus 2010-08-01
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test_INYO_2_2011 KR348976 "Duggal, N.K.; Reisen, W.K.; Fang, Y.; Newman,R.M.; Yang, X.; Ebel, G.D.; Brault,A.C.; Brault,A." "Centers for Disease Control and Prevention, Division of Vector-Borne Infectious Diseases" INYO_2_2011 USA Hogwarts Culex tarsalis 2011-07-18
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test_WNV/mosquito/Bakersfield_CA_USA/2010-07-08/W417 MH508004 "Grubaugh,N.; Fang,Y.; Matteson,N.L.; Gangavarapu,K.; Coffey,L.; Barker,C.; Andersen,K." "The Scripps Research Institute, Department of Immunology and Microbiology" "USA: Bakersfield,California" USA California Hogwarts Bakersfield Culex quinquefasciatus pooled insects 2010-07-08
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test_WNV/mosquito/Larimer-CO-USA/2016-06-27/W1819 OQ721426 "Grubaugh,N.; Matteson,N.; Gangavarupa,K.; Ebel,G.; Murrieta,R.; Fauver,J.; Young,M.; Andersen,K." "The Scripps Research Institute, Department of Immunology and Microbiology" "USA: Larimer, Colorado" USA Colorado Hogwarts Larimer Culex tarsalis pooled insects 2016-06-27
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test_AVA1305539 MF175822 "Aroh,C.; D'Anton,M.; Liang,C.; Raj,P.; Wakeland,B.; Yan,N.; Wakeland,E." "UT Southwestern Medical Center, Department of Immunology" AVA1305539 USA: Dallas Co. TX USA texas Hogwarts Dallas Co Culex quinquefasciatus 2013-08-20
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test_WNV/mosquito/Polk-IA-USA/2017-07-17/W1959 OQ721462 "Grubaugh,N.; Matteson,N.; Gangavarupa,K.; Smith,R.; Andersen,K." "The Scripps Research Institute, Department of Immunology and Microbiology" "USA: Polk, Iowa" USA Iowa Hogwarts Polk Culex restuans pooled insects 2017-07-17
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test_WNV/mosquito/San_Diego_CA_USA/2014-10-31/W014 MH507621 "Grubaugh,N.; Grewal,S.; Matteson,N.L.; Gangavarapu,K.; Gurfield,N.; Andersen,K." "The Scripps Research Institute, Department of Immunology and Microbiology" "USA: San_Diego,California" USA California Hogwarts San Diego Culex quinquefasciatus pooled insects 2014-10-31
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test_WNV/bird/Valley_Center_CA_USA/2008-09-18/W037 MH507637 "Grubaugh,N.; Grewal,S.; Matteson,N.L.; Gangavarapu,K.; Gurfield,N.; Andersen,K." "The Scripps Research Institute, Department of Immunology and Microbiology" "USA: Valley_Center,California" USA California Hogwarts Valey Center Corvus brachyrhynchos tissue 2008-09-18
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test_WNV-1/Cyanocitta cristata /USA/03003243/2003 KX547593 "Shabman,R.; Das,S.R.; Halpin,R.A.; Shilts,M.; Fedorova,N.; Puri,V.; Amedeo,P.; Shrivastava,S.; Maffei,J.; Dupuis,A.; Jones,S.; Backenson,B.; Zink,S.; Ciota,A.; Kramer,L." J. Craig Venter Institute "USA: Washington Co., NY" USA New York Hogwarts Washington Co Cyanocitta cristata 2003-09-28
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test_WNV/mosquito/Parlier_CA_USA/2010-08-12/W188 MH507768 "Grubaugh,N.; Fang,Y.; Matteson,N.L.; Gangavarapu,K.; Coffey,L.; Barker,C.; Andersen,K." "The Scripps Research Institute, Department of Immunology and Microbiology" "USA: Parlier,California" USA California Hogwarts Parlier Culex tarsalis pooled insects 2010-08-12
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test_WNV/mosquito/Yolo-CA-USA/2015-07-16/W0706 OQ721464 "Grubaugh,N.; Matteson,N.; Gangavarupa,K.; Barker,C.; Wheeler,S.; Fang,Y.; Coffey,L.; Reisen,W.; Andersen,K." "The Scripps Research Institute, Department of Immunology and Microbiology" "USA: Yolo, California" USA California Hogwarts Yolo Culex tarsalis pooled insects 2015-07-16
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test_AZ10-91 KF704147 "Plante,J.A.; Burkhalter,K.L.; Mann,B.R.; Godsey,M.S. Jr.; Mutebi,J.P.; Beasley,D.W.; Mutebi,J.-P." Centers for Disease Control and Prevention "USA: Glendale, Maricopa Co., AZ" USA Arizona Hogwarts Glendale Culex quinquefasciatus 2010-08-01

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