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    45 repositories

    • graphs-renderer

      Public
      A javascript library that provides rendering capabilities for CFD, scatterplot and Histogram graphs. It uses d3js for graph rendering.
      JavaScript
      •
      Apache License 2.0
      •2•3•0•5•Updated Jul 10, 2025Jul 10, 2025

    • target-coverage-app

      Public
      Apache License 2.0
      •0•0•0•0•Updated Jul 2, 2025Jul 2, 2025

    • nf-ont-cagrepeat

      Public
      a repository for the nf-ont pipeline
      MIT License
      •0•0•0•0•Updated Jun 25, 2025Jun 25, 2025

    • CoSpred

      Public
      Mass Spectrometry Spectrum Prediction Workflow
      Python
      •
      Apache License 2.0
      •1•7•0•0•Updated Jun 22, 2025Jun 22, 2025

    • Open-Hotgenes

      Public
      R
      •
      Apache License 2.0
      •0•1•0•0•Updated Jun 11, 2025Jun 11, 2025

    • scikit-digital-health

      Public
      Python package for the processing and analysis of Inertial Measurement Unit Data
      sensorswearablesactigraphyimu-sensorpython
      Python
      •
      MIT License
      •23•77•3•2•Updated Jun 10, 2025Jun 10, 2025

    • LISTT

      Public
      Lyme In Silico Typing Tool for Borrelia burgdorferi s.l.
      Python
      •
      Apache License 2.0
      •1•1•0•1•Updated Jun 3, 2025Jun 3, 2025

    • carver

      Public
      Clinical Analysis Reporting and Visualization Ensemble (in R)
      R
      •
      Apache License 2.0
      •3•5•4•0•Updated Jun 2, 2025Jun 2, 2025

    • perturb_seq

      Public
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated May 6, 2025May 6, 2025

    • zippeR

      Public
      Tools for Working with ZIP Codes, ZCTAs, and 3-digit ZCTAs (R package)
      R
      •
      Apache License 2.0
      •0•12•0•0•Updated May 3, 2025May 3, 2025

    • nf-crispr-primer-design

      Public
      Nextflow pipeline for primer design for sequencing CRISPR target sites
      Python
      •
      Apache License 2.0
      •1•0•0•1•Updated May 2, 2025May 2, 2025

    • nf-crispr-pooled-screen

      Public
      CRISPR Pooled Screening Analysis
      Nextflow
      •
      Apache License 2.0
      •1•0•0•0•Updated May 2, 2025May 2, 2025

    • nf-gene-editing-ngs

      Public
      Nextflow NGS analysis pipeline to assess CRISPR gene editing by amplicon sequencing
      Java
      •
      Apache License 2.0
      •0•0•0•0•Updated Apr 30, 2025Apr 30, 2025

    • bigwig-loader

      Public
      A fast dataloader for bigwig files made for machine learning
      Python
      •
      Apache License 2.0
      •3•28•0•1•Updated Apr 30, 2025Apr 30, 2025

    • genome-manager

      Public
      Python
      •
      MIT License
      •2•0•1•1•Updated Apr 28, 2025Apr 28, 2025

    • annofilter-junctions

      Public
      Python
      •
      MIT License
      •1•0•1•1•Updated Apr 28, 2025Apr 28, 2025

    • nf-rnaseq

      Public
      Nextflow
      •
      MIT License
      •0•0•0•0•Updated Apr 24, 2025Apr 24, 2025

    • gtf-scripts

      Public
      Perl
      •
      MIT License
      •0•0•0•0•Updated Apr 24, 2025Apr 24, 2025

    • HLAIIPred

      Public
      Cross-Attention Mechanism for Modeling the Interaction of HLA Class II Molecules with Peptides.
      Python
      •
      Apache License 2.0
      •1•0•0•1•Updated Apr 21, 2025Apr 21, 2025

    • e3moldiffusion

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •2•7•0•0•Updated Mar 12, 2025Mar 12, 2025

    • deprivateR

      Public
      Tools for calculating and visualizing measures of deprivation for social determinants of health research in the United States (R package)
      R
      •
      Apache License 2.0
      •1•4•0•0•Updated Feb 4, 2025Feb 4, 2025

    • JSON_Visualizer

      Public
      JSON Visualizer, a versatile Python-based web application designed for viewing Dataset-JSON files. This tool is compatible with files adhering to the JSON 1.1 schema and supports both JSON and NDJSON formats.
      HTML
      •
      Apache License 2.0
      •0•1•0•0•Updated Jan 7, 2025Jan 7, 2025

    • pharma-hands-on-exercises

      Public
      Rmd training files for getting started with R. Introduces R concepts for data manipulation, visualization and other topics using PhUSE synthetic data.
      R
      •
      Creative Commons Attribution Share Alike 4.0 International
      •26•22•0•1•Updated Nov 12, 2024Nov 12, 2024

    • integrated-qsp-vpop-onco-efficacy-CPT-PSP

      Public
      Code for the manuscript "An integrated quantitative systems pharmacology virtual population approach for calibration with oncology efficacy endpoints."
      MATLAB
      •
      Apache License 2.0
      •0•1•0•0•Updated Oct 23, 2024Oct 23, 2024

    • Dataset-JSON-1.1-Interface

      Public
      CSS
      •
      Apache License 2.0
      •0•1•0•0•Updated Oct 1, 2024Oct 1, 2024

    • TRR-ACoP2022-Public

      Public
      Public release version of ACoP2022
      Julia
      •
      Apache License 2.0
      •2•2•0•1•Updated May 10, 2024May 10, 2024

    • shiny-framework

      Public
      Shiny Framework for reproducible content - Create table in Shiny, then run a production step (on HPC GRID) and compare table objects for 100% match
      R
      •
      Apache License 2.0
      •5•10•0•0•Updated May 9, 2024May 9, 2024

    • pfaster

      Public
      pneumococcal FASTA serotype calling
      Python
      •
      Apache License 2.0
      •2•3•0•1•Updated Mar 22, 2024Mar 22, 2024

    • remaster-the-tidyverse-pfizer

      Public
      Apache License 2.0
      •0•0•0•0•Updated Feb 21, 2024Feb 21, 2024

    • DeepMLAST

      Public
      Deep learning project for automated semantic segmentation of spontaneous lung tumors in murine microCT
      MATLAB
      •
      Apache License 2.0
      •0•0•0•0•Updated Nov 3, 2023Nov 3, 2023