Fred Hutch Data Science Lab

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151 repositories

ITN_course_search
Public
A searchable table for ITN courses
R
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MIT License
•0•0•2•3•Updated Aug 1, 2025Aug 1, 2025
Tools_for_Reproducible_Workflows_in_R
Public
CSS
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Creative Commons Attribution 4.0 International
•0•0•14•1•Updated Aug 1, 2025Aug 1, 2025
Ethical_Data_Handling_for_Cancer_Research
Public
This course is designed to help researchers and investigators understand the key principles of data management from an ethics, privacy, security, usability and discoverability perspective.
security privacy course risk hipaa data-sharing ethics de-identification itn-course audience-leaders
TeX
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Creative Commons Attribution 4.0 International
•0•1•13•2•Updated Aug 1, 2025Aug 1, 2025
GDSCN_SARS_RStudio_on_AnVIL
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Lab module and lectures for identifying phylogenetic history of SARS variants using R
course module anvil phylogenetic-analysis sars-cov-2 gdscn
CSS
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Creative Commons Attribution 4.0 International
•0•0•3•0•Updated Aug 1, 2025Aug 1, 2025
test_bench_to_bytes
Public
Dummy repo created to help figure out https://github.com/fhdsl/bench_to_bytes/issues/7
CSS
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Creative Commons Attribution 4.0 International
•0•0•4•0•Updated Aug 1, 2025Aug 1, 2025
AnVIL_Book_Epigenetics_Intro
Public
An introductory activity for epigenetics, or the idea of "nature versus nurture" in genetics. Learners use the UCSC Genome Browser.
module epigenetics anvil ucsc-browser human-genomes course
CSS
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Creative Commons Attribution 4.0 International
•3•0•0•0•Updated Aug 1, 2025Aug 1, 2025
fhdsl_Training_Kit
Public
This resource is intended to provide guidance and assistance for creating online and in-person training materials.
CSS
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Creative Commons Attribution 4.0 International
•0•0•4•0•Updated Aug 1, 2025Aug 1, 2025
DataViz_Considerations
Public
ITN course "Considerations for Bioinformatic Data Visualization" focusing on considerations for best practices in data visualization
CSS
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Creative Commons Attribution 4.0 International
•0•0•4•2•Updated Aug 1, 2025Aug 1, 2025
Robust_Software_Development
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ITN course on robust software development and giving your code base a full set of features beyond the code itself
CSS
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Creative Commons Attribution 4.0 International
•0•0•4•0•Updated Aug 1, 2025Aug 1, 2025
NIH_Data_Sharing
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Learn about the new NIH data sharing policy, places where you might want to share your particular kind of data, and how to deal with possible challenges associated with the policy.
data-storage policy budgeting data-management data-sharing nih grant-proposals grant-submission hutch-course itn-course
CSS
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Creative Commons Attribution 4.0 International
•0•0•6•1•Updated Aug 1, 2025Aug 1, 2025
GEMs
Public
💎 Materials & Portal for the Genomics Education Modules (GEMs) Program at Fred Hutch
education bioinformatics genomics entry-level entry-level-bioinformatics
TeX
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MIT License
•0•0•52•1•Updated Aug 1, 2025Aug 1, 2025
AnVIL_SOTA_Polls
Public
An OTTR website for analyzing and reporting each year's State of the AnVIL Community Poll
R
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MIT License
•0•0•6•0•Updated Aug 1, 2025Aug 1, 2025
Clinical_Data_Management
Public
CSS
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MIT License
•1•0•6•3•Updated Aug 1, 2025Aug 1, 2025
DataViz_Practice
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ITN course "Cancer Informatics Data Visualization in Practice" focusing on practicing best practices in data visualization
CSS
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Creative Commons Attribution 4.0 International
•0•0•4•2•Updated Aug 1, 2025Aug 1, 2025
DS-Resources
Public
CSS
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MIT License
•0•0•1•0•Updated Aug 1, 2025Aug 1, 2025
AnVIL_Outreach_Dashboard
Public
incomplete
CSS
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Creative Commons Attribution 4.0 International
•0•0•2•0•Updated Aug 1, 2025Aug 1, 2025
AnVIL_Urban_Genomics_PCA
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Lab module and lectures for exploring PCA using feral pigeon populations
course genomics pca anvil urban-data-science
CSS
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Creative Commons Attribution 4.0 International
•0•0•2•1•Updated Aug 1, 2025Aug 1, 2025
GDSCN_BioDIGS_Soil
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This is a BioDIGS in the Classroom companion guide for the BioDIGS project. This particular activity guides students through exploration and visualization of the soil characteristics data using R.
course module anvil gdscn biodigs
CSS
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Creative Commons Attribution 4.0 International
•0•0•6•1•Updated Aug 1, 2025Aug 1, 2025
Containers_for_Scientists
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This course covers how to use containers for scientific software development. Scientific software benefits from the concepts of continuous integration (CI) and continuous deployment (CD). Containers play a critical role in CI/CD by providing a consistent, portable, and isolated environment for building, testing, and deploying software.
docker course containers ci-cd software itn-course audience-software-developers category-software-dev launched-nov2024 reproducibility-series-iv
CSS
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Creative Commons Attribution 4.0 International
•2•1•2•1•Updated Aug 1, 2025Aug 1, 2025
GDSCN_BioDIGS_AMR
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This is a BioDIGS in the Classroom companion guide for the BioDIGS project. This particular activity guides students through an investigation of antimicrobial resistance in the BioDIGS samples using Galaxy.
course module gdscn biodigs
CSS
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Creative Commons Attribution 4.0 International
•0•0•3•1•Updated Aug 1, 2025Aug 1, 2025
ITN_Workshops_2025
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An OTTR website for resources and activities for the ITN workshops at the ITCR Annual Meeting 2025
CSS
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MIT License
•0•0•0•0•Updated Aug 1, 2025Aug 1, 2025
Intermediate-Git-GitHub
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You will expand your current knowledge of Git and GitHub to help your research be more collaborative, reproducible, and transparent.
hutch-course
JavaScript
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Creative Commons Attribution 4.0 International
•0•1•4•1•Updated Aug 1, 2025Aug 1, 2025
AnVIL_SRA_Data
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Pull Sequence Read Archive (SRA) data into AnVIL
course module genomics anvil ncbi-database sequence-read-archive
CSS
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Creative Commons Attribution 4.0 International
•0•0•1•0•Updated Aug 1, 2025Aug 1, 2025
Intermediate_R
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The course continues building programming fundamentals in R programming and data analysis. You will learn how to make use of complex data structures, use custom functions built by other R users, creating your own functions, and how to iterate repeated tasks that scales naturally.
hutch-course
JavaScript
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Creative Commons Attribution 4.0 International
•0•0•4•1•Updated Aug 1, 2025Aug 1, 2025
AnVIL_Demos
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⏱ 30-minute demos and tutorials from our live AnVIL series
cloud course research module genomics cloud-computing anvil
CSS
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Creative Commons Attribution 4.0 International
•2•0•0•0•Updated Aug 1, 2025Aug 1, 2025
bench_to_bytes
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A guide for wet bench researchers about why considering computational and data science skills can be useful for all types of scientific work.
CSS
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Creative Commons Attribution 4.0 International
•0•0•5•5•Updated Aug 1, 2025Aug 1, 2025
reproducibility_capstone
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A capstone course for the ITN Reproducibility Series with hands-on activities
docker reproducible-research reproducibility workflow-automation capstone-project github-secrets github-actions itn-course audience-researchers audience-software-developers
CSS
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Creative Commons Attribution 4.0 International
•0•0•6•1•Updated Aug 1, 2025Aug 1, 2025
GDSCN_BioDIGS_Book
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Getting started guide for using BioDIGS data in the classroom. Includes general information about BioDIGS.
tutorial course anvil r-programming gdscn biodigs
CSS
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Creative Commons Attribution 4.0 International
•0•0•0•1•Updated Aug 1, 2025Aug 1, 2025
Clinical_Data_Analysis
Public
CSS
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Creative Commons Attribution 4.0 International
•0•0•4•1•Updated Aug 1, 2025Aug 1, 2025
coursera_plugin
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Code for our custom plugin
HTML
•0•0•0•0•Updated Jul 31, 2025Jul 31, 2025