Skip to content

@HumanCellAtlas Human Cell Atlas

Change the repository type filter

All

    Repositories list

    121 repositories

    • metadata-schema

      Public
      This repo is for the metadata schemas associated with the HCA
      Python
      •
      Apache License 2.0
      •32•67•85•54•Updated Jul 22, 2025Jul 22, 2025

    • bronze

      Public
      A minimal alarm that reads data from Google Sheets and alerts people via Slack
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•2•1•3•Updated Jul 14, 2025Jul 14, 2025

    • logs

      Public
      Infrastructure for centralizing and indexing logs
      Python
      •
      MIT License
      •2•2•3•156•Updated Jul 14, 2025Jul 14, 2025

    • data-consumer-vignettes

      Public
      Simple walk-throughs of interacting with the DCP as a downstream data consumer.
      Jupyter Notebook
      •
      MIT License
      •5•17•25•100•Updated Jul 14, 2025Jul 14, 2025

    • zentool

      Public
      CLI tool for working with ZenHub / GitHub / Google Sheets
      Python
      •
      MIT License
      •1•6•0•2•Updated Jul 14, 2025Jul 14, 2025

    • secondary-analysis

      Public
      Secondary Analysis Service of the Human Cell Atlas Data Coordination Platform
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•3•124•141•Updated Jul 13, 2025Jul 13, 2025

    • metadata-schema-publisher

      Public
      Script for creating a repo of schemas in response to Github commits
      Python
      •3•1•0•32•Updated Jul 13, 2025Jul 13, 2025

    • upload-service

      Public
      DCP Ingestion File Upload Service
      Python
      •
      MIT License
      •4•4•26•216•Updated Jul 13, 2025Jul 13, 2025

    • ingest-accessioner

      Public
      Scripts for Ingest Accessioning Service
      Python
      •
      Apache License 2.0
      •1•0•0•2•Updated Jul 13, 2025Jul 13, 2025

    • matrix-service

      Public
      DCP Expression Matrix Service
      Python
      •
      MIT License
      •4•12•31•314•Updated Jul 13, 2025Jul 13, 2025

    • cloud-blobstore

      Public
      Simple API that abstracts out differences between the blobstores across different cloud providers.
      Python
      •
      MIT License
      •2•7•1•9•Updated Jul 13, 2025Jul 13, 2025

    • ingest-fastq-validator

      Public
      Python
      •
      Apache License 2.0
      •1•0•0•14•Updated Jul 11, 2025Jul 11, 2025

    • sctools

      Public
      Utilities for large scale distributed single cell data processing
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •8•24•13•29•Updated Jul 11, 2025Jul 11, 2025

    • fusillade

      Public
      Federated User Identity Login & Access Decision Engine
      aws-iamaccess-decision-engine
      Python
      •
      Other
      •1•8•33•68•Updated Jul 11, 2025Jul 11, 2025

    • metadata-spreadsheet-tools

      Public
      Tools for generating metadata spreadsheets
      Python
      •
      Apache License 2.0
      •1•0•1•7•Updated Jul 11, 2025Jul 11, 2025

    • metadata-migration

      Public
      Proof of concept library for migrating metadata.
      Python
      •
      MIT License
      •1•0•0•15•Updated Jul 11, 2025Jul 11, 2025

    • status-api

      Public
      Return build and application status badges
      Python
      •
      MIT License
      •0•0•0•19•Updated Jul 11, 2025Jul 11, 2025

    • data-store

      Public
      Design specs and prototypes for the HCA Data Storage System (DSS, "blue box")
      hcaprod
      Python
      •
      Other
      •6•41•212•90•Updated Jul 11, 2025Jul 11, 2025

    • dcp-diag

      Public
      Development and operations diagnostic tools and libraries
      Python
      •
      MIT License
      •1•2•6•28•Updated Jul 11, 2025Jul 11, 2025

    • ingest-node-accessioner

      Public
      Ingest accessioning component using node-js
      JavaScript
      •
      Apache License 2.0
      •1•0•0•12•Updated Jul 11, 2025Jul 11, 2025

    • data-store-scale-test

      Public
      Scalability tests for the HCA Data Storage System ("blue box")
      Python
      •
      MIT License
      •1•2•1•23•Updated Jul 11, 2025Jul 11, 2025

    • ingest-validator-js

      Public
      Javascript validator for HCA metadata
      JavaScript
      •
      Apache License 2.0
      •6•3•1•37•Updated Jul 11, 2025Jul 11, 2025

    • ingest-broker-api

      Public
      RESTful API for the Ingest Broker
      JavaScript
      •
      Apache License 2.0
      •2•0•0•2•Updated Jun 21, 2025Jun 21, 2025

    • ingest-central

      Public
      Ingest Central is the hub repository for the ingest service
      Jupyter Notebook
      •
      Apache License 2.0
      •1•0•203•6•Updated Jun 21, 2025Jun 21, 2025

    • lira

      Public
      Notification listener for secondary analyses
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •3•5•0•32•Updated Jun 20, 2025Jun 20, 2025

    • dcplib

      Public
      A library of modules shared among multiple Data Coordination Platform components
      Python
      •
      MIT License
      •3•4•8•1•Updated Jun 20, 2025Jun 20, 2025

    • matrix_semantic_map

      Public
      Specification for a JSON schema to map expression matrix annotations to ontology terms
      Python
      •
      Apache License 2.0
      •2•1•1•3•Updated Jun 20, 2025Jun 20, 2025

    • schema-template-generator

      Public
      Interactive UI for generating metadata schema templates
      Python
      •2•2•8•86•Updated Jun 20, 2025Jun 20, 2025

    • ingest-staging-manager

      Public
      Client for handling the creation of staging areas triggered by the ingest service
      Python
      •
      Apache License 2.0
      •1•0•0•2•Updated Jun 20, 2025Jun 20, 2025

    • data-monitoring-dashboard

      Public
      Python
      •1•2•9•59•Updated Jun 20, 2025Jun 20, 2025