Fix kbet (#78)

* fix kbet

* add changelog entry

* fix previous changelog message

Author: rcannood

CHANGELOG.md

@@ -14,7 +14,8 @@
 
 ## Bug fixes
 
-* Update scPRINT to use latest stable version (PR #xx)
+* Update scPRINT to use latest stable version (PR #70)
+* Fix kbet dependencies to numpy<2 and scipy<=1.13 (PR #78).
 
 # task_batch_integration 2.0.0
 

src/metrics/kbet/config.vsh.yaml

@@ -52,8 +52,9 @@ engines:
         pypi:
           - scib==1.1.7
           - rpy2>=3
-          - anndata2ri
+          - anndata2ri==1.3.1
           - scipy<=1.13
+          - numpy<2
 runners:
   - type: executable
   - type: nextflow