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217 files changed
+36554
-6
lines changed- docs/modules
- analysis
- FBA
- FVA
- fastFVA
- logFiles
- mex
- old
- ICONGEMs
- KLdistance
- MOMA
- QFCA
- ROOM
- coupling
- deletion
- Syntheticlethals
- Fast-SL
- dynamicFBA
- exploration
- surfNetSubfunctions
- fastForest
- findMIIS
- fluxEnrichmentAnalysis
- gMCS
- geometricFBA
- igemRNA
- GT1
- LT1
- LT2
- calculateFluxShifts
- filterNonFluxReactions
- filterRateLimittingReactions
- findUpDownRegulatedGenes
- inactiveGeneDeletion
- modelCreation
- mdFBA
- multiSpecies
- SteadyCom
- subroutines
- microbiomeModelingToolbox
- additionalAnalysis
- mgPipe
- pairwiseInteractionModeling
- nutritionAlgorithm
- parsimoniousFBA
- percentileCalc
- persephone
- SeqC_pipeline
- seqc_proc
- additionalFunctions
- rFBA
- rMTA
- relaxedFBA
- robustnessAnalysis
- rumba
- sampling
- ACHR
- BarrierRound
- CMatrix
- coverage
- include
- qd
- PolytopeSimplifier
- coverage
- utils
- CHRR
- sparseFBA
- subspaces
- lsqr
- nullspace
- remote
- rank
- rowReduce
- subspaceProjection
- thermo
- componentContribution
- new
- old
- directionalityReport
- old
- experimentalData
- alberty2006
- ecoli
- metaboliteConcentrations
- transport
- experimentalDesign
- findThermoConsistentFluxSubset
- formulae
- groupContribution
- jankowski
- groupContribution
- new
- old
- wang
- .ipynb_checkpoints
- cache
- conda
- inchi
- new
- old
- molFiles
- new
- old
- optCardThermo
- protons
- new
- old
- reactantContribution
- thermoDirectionality
- thermoFBA
- trainingModel
- cache
- data
- mol
- new
- old
- transport
- utilities
- vonBertalanffy
- topology
- FR
- conservedMoieties
- old
- extremeRays
- lrs
- lrsInterface
- optimalRays
- graphHypergraphConversion
- transport
- uFBA
- wholeBody
- Nutrition_Modelling_Toolbox
- PSCMToolbox
- BMRcalculations
- hostMicrobeInteraction
- io
- setConstraints
- diets
- inputData
- organWeight
- io
- src/analysis
- persephone
- SeqC_pipeline
- seqc_proc
- additionalFunctions
- wholeBody/PSCMToolbox/setConstraints/organWeight
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