Error in deconvolute_cibersort

[huangwb8]

When running deconvolute_cibersort, some errors appear:

assertion failed: CIBERSORT.R is provided
error: exists("cibersort_binary", envir = config_env) is not TRUE

It seems that there is no function cibersort_binary loaded. Could you please repair this bug? Thanks!

[grst]

Hi @huangwb8,

you'll need to provide the path to the CIBERSORT.R file as specified here:
https://icbi-lab.github.io/immunedeconv/articles/immunedeconv.html#special-case-cibersort

[huangwb8]

Thanks! I got it!