GeneQuery/devNotes.txt at master · nubs01/GeneQuery · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
getGeneData

- Allen Data
    - SDS Data (sag & coronal)
    - Gene Data
    - Official Gene Name (in case I am searching an acronym)
    - USD (download, plot ROIs and save fig and data)
        - USD Struct:
            gene
            id
            expression_energy
            zEE
            section_plane
            structures_of_interest
            section_plane_id
            USD_file
            plot_file
    - Expression Grid Data (save in folder)
    * add check to make sure USD and SDS have same section_plane

- Entrez Data


Make Gene card

GeneCard.section_datasets
    id
    section_plane_id
    delegate
    section_plane
    expression_energy
    structures_of_interest
    USD_file
    zEE
    plot_file
    grid_data_path