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fix: syntax error and fnirt applyrefmask spec
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nipype/interfaces/fsl/preprocess.py

Lines changed: 1 addition & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -28,7 +28,6 @@
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class BETInputSpec(FSLCommandInputSpec):
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""""""
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# We use position args here as list indices - so a negative number
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# will put something on the end
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in_file = File(exists=True,
@@ -667,7 +666,7 @@ class FNIRTInputSpec(FSLCommandInputSpec):
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skip_inmask = traits.Bool(argstr='--applyinmask=0', xor=['apply_inmask'],
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desc='skip specified inmask if set, default false')
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apply_refmask = traits.List(traits.Enum(0, 1), argstr='--applyrefmask=%s', xor=['skip_refmask'],
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desc='list of iterations to use reference mask on (1 to use, 0 to skip)', sep=", ")
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desc='list of iterations to use reference mask on (1 to use, 0 to skip)', sep=",")
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apply_inmask = traits.List(traits.Enum(0, 1), argstr='--applyinmask=%s', xor=['skip_inmask'],
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desc='list of iterations to use input mask on (1 to use, 0 to skip)', sep=",")
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skip_implicit_ref_masking = traits.Bool(argstr='--imprefm 0',

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