Error "reached CPU time limit"

[ValentineObrezanenko]

Description of the bug

In DESeqDataSet(rse, design, ignoreRank = TRUE) :
    some variables in design formula are characters, converting to factors
  Error in fn(par, ...) : reached CPU time limit
  Calls: lapply ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
  Execution halted

Good afternoon! I put a small sample (34 samples) into processing - everything went well, without errors. I set a sample for 130 samples, constantly crashes at this place with such an error. Tell me, what could be the problem? I have increased the memory and time limits. Thank you.

Command used and terminal output

In DESeqDataSet(rse, design, ignoreRank = TRUE) :
some variables in design formula are characters, converting to factors
Error in fn(par, ...) : reached CPU time limit
Calls: lapply ... tryCatch -> tryCatchList -> tryCatchOne ->
Execution halted

Relevant files

No response

System information

No response

[piplus2]

Yes, that's probably R complaining because the process was taking too long. It may be either a limit of the computational environment, or something else that I need to investigate. I'm moving to enhancement as it is not a bug.