diff --git a/CHANGELOG.md b/CHANGELOG.md index 3531d49f..e85ae5b0 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -2,7 +2,13 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). -## 1.2.0dev - canguro +## 1.1.2 - canguro + +This release reverts the `wfmash` tool version to 0.10.4, because the current releases are unstable, not documented, and I don't understand how to set the parameters properly. +It is currently unclear, when a new _stable_ release will become available. People like @baozg or @AndreaGuarracino are evaluating. + +- Per default, we set the number of mappings in `wfmash` to `--n_haplotypes - 1`. Previously, this was set to `1`. +- Deactivated parameter `wfmash_hg_filter_ani_diff`, because the older `wfmash` version does not support it. ## 1.1.1 - LATÜRNICH diff --git a/assets/multiqc_config.yml b/assets/multiqc_config.yml index e3d29f8d..31ab221a 100644 --- a/assets/multiqc_config.yml +++ b/assets/multiqc_config.yml @@ -1,7 +1,7 @@ report_comment: > - This report has been generated by the nf-core/pangenome + This report has been generated by the nf-core/pangenome analysis pipeline. For information about how to interpret these results, please see the - documentation. + documentation. report_section_order: "nf-core-pangenome-methods-description": order: -1000 diff --git a/nextflow.config b/nextflow.config index 9782b3f4..3d10ac90 100644 --- a/nextflow.config +++ b/nextflow.config @@ -277,7 +277,7 @@ manifest { description = """The pangenome graph construction pipeline renders a collection of sequences into a pangenome graph. Its goal is to build a graph that is locally directed and acyclic while preserving large-scale variation. Maintaining local linearity is important for interpretation, visualization, mapping, comparative genomics, and reuse of pangenome graphs""" mainScript = 'main.nf' nextflowVersion = '!>=23.04.0' - version = '1.2.0dev' + version = '1.1.2' doi = 'https://doi.org/10.5281/zenodo.8202636' }