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modules.json
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modules.json
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{
"name": "nf-core/methylseq",
"homePage": "https://github.com/nf-core/methylseq",
"repos": {
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"bismark/align": {
"branch": "master",
"git_sha": "9a1e8bb6a5d205cf7807dcefca872a3314b2f3e6",
"installed_by": ["fastq_align_dedup_bismark", "modules"]
},
"bismark/coverage2cytosine": {
"branch": "master",
"git_sha": "79922141f1033bc3b56dabef0f0eff68b2b0fb03",
"installed_by": ["fastq_align_dedup_bismark", "modules"]
},
"bismark/deduplicate": {
"branch": "master",
"git_sha": "79922141f1033bc3b56dabef0f0eff68b2b0fb03",
"installed_by": ["fastq_align_dedup_bismark", "modules"]
},
"bismark/genomepreparation": {
"branch": "master",
"git_sha": "79922141f1033bc3b56dabef0f0eff68b2b0fb03",
"installed_by": ["fasta_index_bismark_bwameth", "modules"]
},
"bismark/methylationextractor": {
"branch": "master",
"git_sha": "79922141f1033bc3b56dabef0f0eff68b2b0fb03",
"installed_by": ["fastq_align_dedup_bismark", "modules"]
},
"bismark/report": {
"branch": "master",
"git_sha": "79922141f1033bc3b56dabef0f0eff68b2b0fb03",
"installed_by": ["fastq_align_dedup_bismark", "modules"]
},
"bismark/summary": {
"branch": "master",
"git_sha": "dfd89399e3c6e2422c4cdcf0aaa8cf2393dc51c9",
"installed_by": ["fastq_align_dedup_bismark", "modules"]
},
"bwameth/align": {
"branch": "master",
"git_sha": "2edb63067971fb906749e96bf22b23a4ec892a62",
"installed_by": ["fastq_align_dedup_bwameth", "modules"]
},
"bwameth/index": {
"branch": "master",
"git_sha": "a716d10039f9728f2674f45c33a95b605851ea50",
"installed_by": ["fasta_index_bismark_bwameth", "modules"]
},
"cat/fastq": {
"branch": "master",
"git_sha": "a1abf90966a2a4016d3c3e41e228bfcbd4811ccc",
"installed_by": ["modules"]
},
"fastqc": {
"branch": "master",
"git_sha": "dc94b6ee04a05ddb9f7ae050712ff30a13149164",
"installed_by": ["modules"]
},
"gunzip": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["fasta_index_bismark_bwameth", "modules"]
},
"methyldackel/extract": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["fastq_align_dedup_bwameth", "modules"]
},
"methyldackel/mbias": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["fastq_align_dedup_bwameth", "modules"]
},
"multiqc": {
"branch": "master",
"git_sha": "cf17ca47590cc578dfb47db1c2a44ef86f89976d",
"installed_by": ["modules"]
},
"parabricks/fq2bammeth": {
"branch": "master",
"git_sha": "2edb63067971fb906749e96bf22b23a4ec892a62",
"installed_by": ["fastq_align_dedup_bwameth"]
},
"picard/markduplicates": {
"branch": "master",
"git_sha": "49f4e50534fe4b64101e62ea41d5dc43b1324358",
"installed_by": ["fastq_align_dedup_bwameth", "modules"]
},
"preseq/lcextrap": {
"branch": "master",
"git_sha": "a1abf90966a2a4016d3c3e41e228bfcbd4811ccc",
"installed_by": ["modules"]
},
"qualimap/bamqc": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"qualimap/bamqccram": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"samtools/faidx": {
"branch": "master",
"git_sha": "b13f07be4c508d6ff6312d354d09f2493243e208",
"installed_by": ["fasta_index_bismark_bwameth", "modules"]
},
"samtools/flagstat": {
"branch": "master",
"git_sha": "2d20463181b1c38981a02e90d3084b5f9fa8d540",
"installed_by": ["fastq_align_dedup_bwameth", "modules"]
},
"samtools/index": {
"branch": "master",
"git_sha": "b13f07be4c508d6ff6312d354d09f2493243e208",
"installed_by": ["fastq_align_dedup_bismark", "fastq_align_dedup_bwameth", "modules"]
},
"samtools/sort": {
"branch": "master",
"git_sha": "b7800db9b069ed505db3f9d91b8c72faea9be17b",
"installed_by": ["fastq_align_dedup_bismark", "fastq_align_dedup_bwameth", "modules"]
},
"samtools/stats": {
"branch": "master",
"git_sha": "2d20463181b1c38981a02e90d3084b5f9fa8d540",
"installed_by": ["fastq_align_dedup_bwameth", "modules"]
},
"trimgalore": {
"branch": "master",
"git_sha": "4c2d06a5e79abf08ba7f04c58e39c7dad75f094d",
"installed_by": ["modules"]
},
"untar": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["fasta_index_bismark_bwameth", "modules"]
}
}
},
"subworkflows": {
"nf-core": {
"fasta_index_bismark_bwameth": {
"branch": "master",
"git_sha": "e24c9731daae27a4cd0b072f2e50cc8401a492db",
"installed_by": ["subworkflows"]
},
"fastq_align_dedup_bismark": {
"branch": "master",
"git_sha": "af84433c2e619cf28e026d4140b1b8763ae3690b",
"installed_by": ["subworkflows"]
},
"fastq_align_dedup_bwameth": {
"branch": "master",
"git_sha": "bd5f75ccaf2345269810e66e85de8a70e4de8764",
"installed_by": ["subworkflows"]
},
"utils_nextflow_pipeline": {
"branch": "master",
"git_sha": "c2b22d85f30a706a3073387f30380704fcae013b",
"installed_by": ["subworkflows"]
},
"utils_nfcore_pipeline": {
"branch": "master",
"git_sha": "51ae5406a030d4da1e49e4dab49756844fdd6c7a",
"installed_by": ["subworkflows"]
},
"utils_nfschema_plugin": {
"branch": "master",
"git_sha": "2fd2cd6d0e7b273747f32e465fdc6bcc3ae0814e",
"installed_by": ["subworkflows"]
}
}
}
}
}
}