You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Currently genomeassembler does not assemble phased genomes. Clearly, being able to produce phased assemblies would be neat. There are several phasing strategies, for example hifiasm would support HI-C reads, or parental short-reads.
Maybe using https://github.com/yangao07/longcallD to phase the long-reads (assuming a reference is available) pre-assembly and assembling haplotypes from the phased reads would be a alternative option, that requires no additional inputs?
The text was updated successfully, but these errors were encountered:
Description of feature
Currently
genomeassembler
does not assemble phased genomes. Clearly, being able to produce phased assemblies would be neat. There are several phasing strategies, for examplehifiasm
would support HI-C reads, or parental short-reads.Maybe using https://github.com/yangao07/longcallD to phase the long-reads (assuming a reference is available) pre-assembly and assembling haplotypes from the phased reads would be a alternative option, that requires no additional inputs?
The text was updated successfully, but these errors were encountered: