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Read phasing? #134

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nschan opened this issue Mar 25, 2025 · 0 comments
Open

Read phasing? #134

nschan opened this issue Mar 25, 2025 · 0 comments
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enhancement New feature or request question Further information is requested

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@nschan
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nschan commented Mar 25, 2025

Description of feature

Currently genomeassembler does not assemble phased genomes. Clearly, being able to produce phased assemblies would be neat. There are several phasing strategies, for example hifiasm would support HI-C reads, or parental short-reads.
Maybe using https://github.com/yangao07/longcallD to phase the long-reads (assuming a reference is available) pre-assembly and assembling haplotypes from the phased reads would be a alternative option, that requires no additional inputs?

@nschan nschan added enhancement New feature or request question Further information is requested labels Mar 25, 2025
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