diff --git a/conf/pipeline/deepmodeloptim/crg.config b/conf/pipeline/deepmodeloptim/crg.config index cfa193dea..aec61eb53 100644 --- a/conf/pipeline/deepmodeloptim/crg.config +++ b/conf/pipeline/deepmodeloptim/crg.config @@ -15,7 +15,7 @@ profiles { singularity { enabled = true envWhitelist = "CUDA_VISIBLE_DEVICES,NVIDIA_VISIBLE_DEVICES" - if (params.use_gpu) { singularity.runOptions = '--nv' } + runOptions = params.contains('use_gpu') && params.use_gpu ? '--nv' : '' pullTimeout = "60m" } } diff --git a/conf/pipeline/multiplesequencealign/crg.config b/conf/pipeline/multiplesequencealign/crg.config index 791e56b2f..f0ddf1655 100644 --- a/conf/pipeline/multiplesequencealign/crg.config +++ b/conf/pipeline/multiplesequencealign/crg.config @@ -14,7 +14,7 @@ profiles { singularity { enabled = true envWhitelist = "CUDA_VISIBLE_DEVICES,NVIDIA_VISIBLE_DEVICES" - if (params.use_gpu) { singularity.runOptions = '--nv' } + runOptions = params.contains('use_gpu') && params.use_gpu ? '--nv' : '' pullTimeout = "60m" } }