From 2cfd40a15d798daebf0f79074d0ec6fbf614bbc8 Mon Sep 17 00:00:00 2001
From: d4straub <daniel.straub@uni-tuebingen.de>
Date: Thu, 11 Dec 2025 14:56:06 +0100
Subject: [PATCH 1/3] fix typo in report template

---
 assets/report_template.Rmd | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/assets/report_template.Rmd b/assets/report_template.Rmd
index b6a56535..c521dfeb 100644
--- a/assets/report_template.Rmd
+++ b/assets/report_template.Rmd
@@ -252,7 +252,7 @@ if ( file.exists(params$mqc_plot) ) {
     knitr::include_graphics(params$mqc_plot)
 }
 ```
-```{r, !isFALSE(params$mqc_plot), results='asis'}
+```{r, eval = !isFALSE(params$mqc_plot), results='asis'}
 if ( !file.exists(params$mqc_plot) ) {
     cat(paste0("
 _This plot is missing. That is only a visual mishap, all data can be found in the MultiQC report._

From d030121c5ba749399b16486a4a8580912c0b6725 Mon Sep 17 00:00:00 2001
From: d4straub <daniel.straub@uni-tuebingen.de>
Date: Thu, 11 Dec 2025 15:01:57 +0100
Subject: [PATCH 2/3] trgger nf-test for more files

---
 nf-test.config | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/nf-test.config b/nf-test.config
index 3a1fff59..c8f94ddf 100644
--- a/nf-test.config
+++ b/nf-test.config
@@ -15,7 +15,7 @@ config {
     profile "test"
 
     // list of filenames or patterns that should be trigger a full test run
-    triggers 'nextflow.config', 'nf-test.config', 'conf/test.config', 'tests/nextflow.config', 'tests/.nftignore'
+    triggers 'nextflow.config', 'nf-test.config', 'conf/test.config', 'tests/nextflow.config', 'tests/.nftignore', 'bin/*', 'assets/schema_input.json', 'nextflow_schema.json', 'assets/report_template.Rmd'
 
     // load the necessary plugins
     plugins {

From 55f55fe2f1c7d7663616c7687be983938bab26a2 Mon Sep 17 00:00:00 2001
From: d4straub <daniel.straub@uni-tuebingen.de>
Date: Thu, 11 Dec 2025 15:39:42 +0100
Subject: [PATCH 3/3] update CHANGELOG

---
 CHANGELOG.md | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index 0b03e38e..ec4faa7e 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -15,7 +15,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 ### `Fixed`
 
 [#926](https://github.com/nf-core/ampliseq/pull/926) - Template update for nf-core/tools version 3.4.1
-[#929](https://github.com/nf-core/ampliseq/pull/929) - A bug in a dependency of MultiQC can lead (rarely) to plot generation being omitted, without warning. In that case, the subsequent pipeline summary report failed previously, now it gracefully handles that issue.
+[#929](https://github.com/nf-core/ampliseq/pull/929),[#935](https://github.com/nf-core/ampliseq/pull/935) - A bug in a dependency of MultiQC can lead (rarely) to plot generation being omitted, without warning. In that case, the subsequent pipeline summary report failed previously, now it gracefully handles that issue.
 
 ### `Dependencies`