diff --git a/CHANGELOG.md b/CHANGELOG.md index 0b03e38e..ec4faa7e 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -15,7 +15,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ### `Fixed` [#926](https://github.com/nf-core/ampliseq/pull/926) - Template update for nf-core/tools version 3.4.1 -[#929](https://github.com/nf-core/ampliseq/pull/929) - A bug in a dependency of MultiQC can lead (rarely) to plot generation being omitted, without warning. In that case, the subsequent pipeline summary report failed previously, now it gracefully handles that issue. +[#929](https://github.com/nf-core/ampliseq/pull/929),[#935](https://github.com/nf-core/ampliseq/pull/935) - A bug in a dependency of MultiQC can lead (rarely) to plot generation being omitted, without warning. In that case, the subsequent pipeline summary report failed previously, now it gracefully handles that issue. ### `Dependencies` diff --git a/assets/report_template.Rmd b/assets/report_template.Rmd index b6a56535..c521dfeb 100644 --- a/assets/report_template.Rmd +++ b/assets/report_template.Rmd @@ -252,7 +252,7 @@ if ( file.exists(params$mqc_plot) ) { knitr::include_graphics(params$mqc_plot) } ``` -```{r, !isFALSE(params$mqc_plot), results='asis'} +```{r, eval = !isFALSE(params$mqc_plot), results='asis'} if ( !file.exists(params$mqc_plot) ) { cat(paste0(" _This plot is missing. That is only a visual mishap, all data can be found in the MultiQC report._ diff --git a/nf-test.config b/nf-test.config index 3a1fff59..c8f94ddf 100644 --- a/nf-test.config +++ b/nf-test.config @@ -15,7 +15,7 @@ config { profile "test" // list of filenames or patterns that should be trigger a full test run - triggers 'nextflow.config', 'nf-test.config', 'conf/test.config', 'tests/nextflow.config', 'tests/.nftignore' + triggers 'nextflow.config', 'nf-test.config', 'conf/test.config', 'tests/nextflow.config', 'tests/.nftignore', 'bin/*', 'assets/schema_input.json', 'nextflow_schema.json', 'assets/report_template.Rmd' // load the necessary plugins plugins {