From 17cb5971bb5a7ba22a13325d760a1eed124cc3e5 Mon Sep 17 00:00:00 2001
From: Trevor Bedford <trevor@bedford.io>
Date: Thu, 16 Mar 2023 12:20:39 -0700
Subject: [PATCH] Update exclude

---
 defaults/exclude.txt | 19 +++++++++++++++++++
 1 file changed, 19 insertions(+)

diff --git a/defaults/exclude.txt b/defaults/exclude.txt
index f2fdbadc0..f7d9cf3f3 100644
--- a/defaults/exclude.txt
+++ b/defaults/exclude.txt
@@ -69,6 +69,7 @@ Iceland/288/2020
 Ireland/COR-20134/2020
 Netherlands/Oisterwijk_1364072/2020
 Netherlands/Utrecht_1364066/2020
+Pakistan/JRCGR_SCV-54_IBGE-06/2020
 Pakistan/Manga-KPK/2020
 Qatar/QA02/2020
 Qatar/QA08/2020
@@ -2614,6 +2615,8 @@ Netherlands/Leiden-0001/2020
 Russia/Nsk-FRCFTM-1-15a/2020
 #V76/2
 mink/USA/OR-20-034329-010/2020
+mink/Poland/01965-9/2023
+mink/Poland/01965-12/2023
 #V1
 Russia/SPE-RII-33958V/2020
 Russia/NVS-RII-MH1097V/2020
@@ -10917,8 +10920,11 @@ OV104542
 OV104635
 OV106697
 OV108314
+OV110709
 OV114059
+OV111669
 OV111753
+OV111791
 OV113567
 OV114062
 MWI/MLW00073/2020
@@ -10973,6 +10979,8 @@ USA/TN-SPHL-0038/2021	# Strain has same BioSample accession (SAMN21899799) as US
 
 # missing mutations relative to date
 Australia/NT228/2021
+Australia/VIC18809/2021
+Australia/VIC18830/2021
 Belize/CML-178/2021
 CAN/KB-B-001/2021
 CostaRica/CABANA-CR-UCR-INCIENSA-ITV-UBA-Uda-UGA-IMSS-UPC-2039-655629/2021
@@ -10987,6 +10995,7 @@ EGY/CCHE57357_W3_A099/2021
 EGY/CCHE57357_W3_A116/2021
 EGY/CCHE57357_W3_A152/2021
 EGY/CCHE57357_Wave_3_A022/2021
+EGY/EGY_CCHE57357_P_37/2020
 EGY/EGY_CCHE57357_A_54/2020
 EGY/Egypt-Army-Thirdwave350/2021
 EGY/Egypt-Army-Thirdwave352/2021
@@ -10997,7 +11006,9 @@ Egypt/ARMY-47/2021
 Egypt/ARMY-281/2021
 Egypt/ARMY-350/2021
 Egypt/ARMY-351/2021
+Egypt/ARMY-352/2021
 Egypt/ARMY-353/2021
+GMB/4448/2020
 IRQ/NAJAF/2022
 Morocco/RA92C/2020
 Morocco/RA112-3C/2021
@@ -11010,15 +11021,18 @@ Nigeria/MRL-0S-1885/2021
 OM108445
 PAK/JRCGR_KHI_SCV-184/2021
 PAK/JRCGR_SCV-54_IBGE-06/2020
+PAK/khi-w1-s5/2020
 PAK/WA-UW-1729/2020
 RUS/VIC01/2021
 Senegal/SN-MBO-211915/2021
+Thailand/63005380__2019/2020
 UnitedArabEmirates/1046/2020
 USA/CA-CHLA-PLM08055689/2020
 USA/FL-CDC-ASC210247553/2021
 USA/GA-CDC-ASC210274744/2021
 USA/LA-CDC-ASC210310458/2021
 USA/MI-CDC-ASC210481590/2021
+USA/MO-CDC-ASC210273594/2021
 USA/ND-UNDGC-G2021_58_50/2021
 USA/ND-UNDGC-G2021_124_58/2021
 USA/NMINBRE-ILLUMINA-WGS-215780/2020
@@ -11074,6 +11088,7 @@ Comoros/SS10405/2022
 Comoros/SS10411/2022
 England/LSPA-3F0C6DD/2022
 Gambia/16-186BV/2022
+Iraq/Erbil-10/2022
 TrinidadandTobago/397052/2022
 Vietnam/PIHCM_1540/2022
 
@@ -11107,6 +11122,7 @@ USA/UT-04508/2020   # Strain has same BioSample accession (SAMN15901824) as USA/
 USA/UT-08768/2020   # Strain has same BioSample accession (SAMN15901842) as USA/UT-04409/2020
 
 # too many mutations relative to date
+DRC/ILRI_COVM00354/2020
 Lebanon/LAU-R84/2020
 Lebanon/LAU-R89/2020
 Lebanon/LAU-R95/2020
@@ -11158,6 +11174,9 @@ Israel/ICH-741238457/2020
 # Early BA.2.12.1 with excess mutations
 Qatar/DA-USAFSAM-S15231/2022
 
+# Early / divergent BA.5
+Bolivia/CBBA-PUC_MVL_3357/2022
+
 # Omicrons with too early date
 env/Austria/CeMM31016/2021
 Eswatini/N22721/2021