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pyproject.toml
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[project]
name = "derotation"
authors = [{name = "Laura Porta", email= "[email protected]"}]
description = "Derotate 3-photon calcium imaging videos"
readme = "README.md"
requires-python = ">=3.10.0"
dynamic = ["version"]
license = {text = "BSD-3-Clause"}
classifiers = [
"Development Status :: 2 - Pre-Alpha",
"Programming Language :: Python",
"Programming Language :: Python :: 3",
"Programming Language :: Python :: 3.10",
"Programming Language :: Python :: 3.11",
"Programming Language :: Python :: 3.12",
"Operating System :: OS Independent",
"License :: OSI Approved :: BSD License",
]
dependencies = [
"numpy",
"tiffile",
"matplotlib",
"scipy",
"PyYAML",
"fancylog",
"matplotlib",
"pandas",
"tqdm",
"scikit-learn",
"scikit-image",
"bayesian-optimization",
]
[project.urls]
"Homepage" = "https://github.com/neuroinformatics-unit/derotation"
"Bug Tracker" = "https://github.com/neuroinformatics-unit/derotation/issues"
"Documentation" = "https://neuroinformatics-unit.github.io/derotation"
"Source Code" = "https://github.com/neuroinformatics-unit/derotation"
"User Support" = "https://github.com/neuroinformatics-unit/derotation/issues"
[project.optional-dependencies]
dev = [
"pytest",
"pytest-cov",
"coverage",
"tox",
"black",
"mypy",
"pre-commit",
"ruff",
"setuptools_scm",
]
[build-system]
requires = [
"setuptools>=45",
"wheel",
"setuptools_scm[toml]>=6.2",
]
build-backend = "setuptools.build_meta"
[tool.setuptools]
include-package-data = true
[tool.setuptools.packages.find]
include = ["derotation*"]
exclude = ["tests", "docs*"]
[tool.pytest.ini_options]
addopts = "--cov=derotation"
filterwarnings = [
"error",
]
[tool.setuptools_scm]
[tool.check-manifest]
ignore = [
".yaml",
"tox.ini",
"tests/",
"tests/test_unit/",
"tests/test_integration/",
"docs/",
"docs/source/",
]
[tool.ruff]
line-length = 79
exclude = ["__init__.py", "build", ".eggs"]
lint.select = [
"E", # pycodestyle errors
"F", # Pyflakes
"I", # isort
# You can see what all the rules do here: https://docs.astral.sh/ruff/rules/
# Some additional ruff rules that might be useful (uncomment to enable)
#"UP", # pyupgrade
#"B", # flake8 bugbear
#"SIM", # flake8 simplify
#"C90", # McCabe complexity
]
fix = true
[tool.ruff.format]
docstring-code-format = true # Also format code in docstrings (e.g. examples)
[tool.tox]
legacy_tox_ini = """
[tox]
envlist = py{310,311,312}
isolated_build = True
[gh-actions]
python =
3.10: py310
3.11: py311
3.12: py312
[testenv]
extras =
dev
commands =
pytest -v --color=yes --cov={{cookiecutter.module_name}} --cov-report=xml
"""
[tool.codespell]
skip = '.git'
ignore-words-list = "ptd"
check-hidden = true