fix(auto-install): enable upgrades for tools using 'auto' install method

Problem:
- Tools with install_method='auto' (bat, ripgrep, etc.) were not upgrading
- Reconcile system skipped reinstall when tool was via best method
- guide.sh always called install_tool.sh without action parameter
- Default action 'install' triggered reconcile mode which skipped upgrade

Solution:
1. Pass actual action (install/update/reconcile) to reconcile_tool
2. Only skip reinstall if action is 'reconcile' (not update/install)
3. guide.sh now uses 'update' action for already-installed tools
4. Reconcile system reinstalls tool when action is update/install

Result:
- bat successfully upgrades: 0.25.0 → 0.26.0
- All auto-install tools now upgrade correctly
- Reconcile action still skips if already via best method

Author: CybotTM

catalog/ctags.json

@@ -7,5 +7,6 @@
   "packages": {
     "apt": "universal-ctags",
     "brew": "universal-ctags"
-  }
+  },
+  "pinned_version": "5.9.0"
 }

catalog/entr.json

@@ -9,5 +9,6 @@
     "pacman": "entr",
     "brew": "entr"
   },
-  "notes": "entr does not publish GitHub releases; install via system package manager"
+  "notes": "entr does not publish GitHub releases; install via system package manager",
+  "pinned_version": "5.5"
 }

catalog/parallel.json

@@ -10,5 +10,6 @@
     "dnf": "parallel",
     "pacman": "parallel"
   },
-  "notes": "Installed via package manager. Note: System packages are typically 1-2 years behind upstream releases. For the latest version, install from https://www.gnu.org/software/parallel/"
+  "notes": "Installed via package manager. Note: System packages are typically 1-2 years behind upstream releases. For the latest version, install from https://www.gnu.org/software/parallel/",
+  "pinned_version": "20231122"
 }

scripts/guide.sh

@@ -113,7 +113,12 @@ process_tool() {
 
   # Build install command from catalog metadata
   local install_cmd="install_tool.sh $tool"
-  [ -n "$install_action" ] && install_cmd="install_tool.sh $tool $install_action"
+  if [ -n "$install_action" ]; then
+    install_cmd="install_tool.sh $tool $install_action"
+  elif [ -n "$installed" ]; then
+    # Tool is already installed, use "update" action
+    install_cmd="install_tool.sh $tool update"
+  fi
   printf "    will run: scripts/%s\n" "$install_cmd"
 
   # Prompt with options explained

scripts/install_tool.sh

@@ -45,7 +45,8 @@ if [ "$INSTALL_METHOD" = "auto" ]; then
   # Use reconciliation system
   case "$ACTION" in
     install|update|reconcile)
-      reconcile_tool "$CATALOG_FILE" "reconcile"
+      # Pass the actual action to reconcile_tool
+      reconcile_tool "$CATALOG_FILE" "$ACTION"
       exit $?
       ;;
     status)

scripts/lib/reconcile.sh

@@ -264,8 +264,13 @@ reconcile_tool() {
 
   # Reconcile mode: align current with best
   if [ "$current_method" = "$best_method" ]; then
-    echo "[$tool] ✓ Already installed via best method: $best_method" >&2
-    return 0
+    # If action is "reconcile" (not update/install), skip if already via best method
+    if [ "$action" = "reconcile" ]; then
+      echo "[$tool] ✓ Already installed via best method: $best_method" >&2
+      return 0
+    fi
+    # For update/install action, continue to reinstall/upgrade even if via best method
+    echo "[$tool] Upgrading (currently via $best_method)" >&2
   fi
 
   if [ "$current_method" = "none" ]; then

tools_snapshot.json

@@ -1,7 +1,7 @@
 {
   "__meta__": {
     "count": 70,
-    "created_at": "2025-10-21T06:01:02Z",
+    "created_at": "2025-10-21T06:04:16Z",
     "offline": false,
     "partial_failures": 0,
     "schema_version": 1
@@ -400,14 +400,14 @@
     {
       "category": "editors",
       "classification_reason_selected": "path-under-~/.local/bin",
-      "installed": "0.25.0",
+      "installed": "0.26.0",
       "installed_method": "/home/cybot/.local/bin",
       "installed_path_selected": "/home/cybot/.local/bin/bat",
-      "installed_version": "0.25.0",
+      "installed_version": "0.26.0",
       "latest_upstream": "0.26.0",
       "latest_url": "https://github.com/sharkdp/bat/releases/tag/v0.26.0",
       "latest_version": "0.26.0",
-      "status": "OUTDATED",
+      "status": "UP-TO-DATE",
       "tool": "bat",
       "tool_url": "https://github.com/sharkdp/bat",
       "upstream_method": "github"