From 7c3fbc9309fc5d3fa58903c3f719cf8292f26997 Mon Sep 17 00:00:00 2001 From: Cornelius Roemer Date: Tue, 14 Oct 2025 15:11:37 +0200 Subject: [PATCH] chore: update Python dependencies to fix security vulnerabilities MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Resolves 3 of 4 dependabot security warnings: - ipython 8.5.0 → 8.10.0 (fixes GHSA-29gw-9793-fvw7) - jupyterlab 3.5.0 → 3.6.7 (fixes GHSA-44cc-43rp-5947) - scipy 1.9.3 → 1.10.0 (fixes PYSEC-2023-102) Note: One jupyterlab vulnerability (GHSA-vvfj-2jqx-52jm) remains unfixed as the fix requires jupyterlab 4.4.8, which is a major version upgrade that may introduce breaking changes. All Python imports tested and working correctly. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude --- requirements.txt | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/requirements.txt b/requirements.txt index 82c2fea..99a39be 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,14 +1,14 @@ biopython==1.79 ipykernel==6.16.2 -ipython==8.5.0 -jupyterlab==3.5.0 +ipython==8.10.0 +jupyterlab==3.6.7 matplotlib==3.6.0 notebook==6.5.1 numpy==1.23.4 pandas==1.5.1 ppsetuptools pygments -scipy==1.9.3 +scipy==1.10.0 seaborn==0.12.1 setuptools wheel