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visualize_all.bash
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#!/bin/bash
# Santiago Nunez-Corrales and Eric Jakobsson
# Illinois Informatics and Molecular and Cell Biology
# University of Illinois at Urbana-Champaign
# {nunezco,jake}@illinois.edu
#
# A simple tunable model for COVID-19 response
# 0. Visualize the population pyramid
python visualize_pop_pyramid.py
# 1. Visualize the Rt callibration
python visualize_rt_with_ci_calib.py outcomes/cu-current-R0-callibration.csv rt_calib.png
python visualize_feature_with_ci_calib.py SymptQuarantined 0.005 outcomes/cu-current-R0-callibration.csv active_calib.png
# 2. Visualize Rt for all testing levels and counterfactual
python visualize_feature_per_testing.py Rt 0.0 2.0 0.0 outcomes/cu-25-nisol.csv.csv outcomes/cu-50-nisol.csv.csv outcomes/cu-75-nisol.csv.csv outcomes/cu-counterfactual.csv.csv rt_nisol.png
python visualize_feature_per_testing.py Rt 0.0 2.0 0.0 outcomes/cu-25-yisol.csv.csv outcomes/cu-50-yisol.csv.csv outcomes/cu-75-yisol.csv.csv outcomes/cu-counterfactual.csv.csv rt_yisol.png
# 3. Visualize active cases for all testing levels and counterfactual
python visualize_feature_per_testing.py SymptQuarantined 80.0 0.04 0.0 outcomes/cu-25-nisol.csv.csv outcomes/cu-50-nisol.csv.csv outcomes/cu-75-nisol.csv.csv outcomes/cu-counterfactual.csv.csv active_nisol.png
python visualize_feature_per_testing.py SymptQuarantined 80.0 0.04 0.0 outcomes/cu-25-yisol.csv.csv outcomes/cu-50-yisol.csv.csv outcomes/cu-75-yisol.csv.csv outcomes/cu-counterfactual.csv.csv active_yisol.png
# 4. Visualize asymptomatic cases for all testing levels and counterfactual
python visualize_feature_per_testing.py Asymptomatic 80 0.06 0.0 outcomes/cu-25-nisol.csv.csv outcomes/cu-50-nisol.csv.csv outcomes/cu-75-nisol.csv.csv outcomes/cu-counterfactual.csv.csv asympt_nisol.png
python visualize_feature_per_testing.py Asymptomatic 80 0.06 0.0 outcomes/cu-25-yisol.csv.csv outcomes/cu-50-yisol.csv.csv outcomes/cu-75-yisol.csv.csv outcomes/cu-counterfactual.csv.csv asympt_yisol.png
# 5. Visualize severe cases for all testing levels and counterfactual
python visualize_feature_per_testing.py Severe 80 0.0004 0.0 outcomes/cu-25-nisol.csv.csv outcomes/cu-50-nisol.csv.csv outcomes/cu-75-nisol.csv.csv outcomes/cu-counterfactual.csv.csv severe_nisol.png
python visualize_feature_per_testing.py Severe 80 0.0004 0.0 outcomes/cu-25-yisol.csv.csv outcomes/cu-50-yisol.csv.csv outcomes/cu-75-yisol.csv.csv outcomes/cu-counterfactual.csv.csv severe_yisol.png
# 6. Visualize private value for all testing levels and counterfactual
python visualize_feature_per_testing.py CumulPrivValue 0.0 175.0 0 outcomes/cu-25-nisol.csv.csv outcomes/cu-50-nisol.csv.csv outcomes/cu-75-nisol.csv.csv outcomes/cu-counterfactual.csv.csv priv_nisol.png
python visualize_feature_per_testing.py CumulPrivValue 0.0 175.0 0 outcomes/cu-25-yisol.csv.csv outcomes/cu-50-yisol.csv.csv outcomes/cu-75-yisol.csv.csv outcomes/cu-counterfactual.csv.csv priv_yisol.png
# 7. Visualize public value for all testing levels and counterfactual
python visualize_feature_per_testing.py CumulPublValue 0.0 1000.0 -50000.0 outcomes/cu-25-nisol.csv.csv outcomes/cu-50-nisol.csv.csv outcomes/cu-75-nisol.csv.csv outcomes/cu-counterfactual.csv.csv publ_nisol.png
python visualize_feature_per_testing.py CumulPublValue 0.0 1000.0 -50000.0 outcomes/cu-25-yisol.csv.csv outcomes/cu-50-yisol.csv.csv outcomes/cu-75-yisol.csv.csv outcomes/cu-counterfactual.csv.csv publ_yisol.png