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SessionInfo.txt
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> sessionInfo()
R version 3.6.1 (2019-07-05)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows >= 8 x64 (build 9200)
Matrix products: default
locale:
[1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252 LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C LC_TIME=English_United States.1252
attached base packages:
[1] grid stats4 parallel stats graphics grDevices utils datasets methods base
other attached packages:
[1] networkD3_0.4 KernSmooth_2.23-16 fields_10.3 maps_3.3.0
[5] spam_2.5-1 dotCall64_1.0-0 DoubletFinder_2.0.3 viridis_0.5.1
[9] viridisLite_0.3.0 uwot_0.1.5 plotly_4.9.1 harmony_1.0
[13] Rcpp_1.0.3 scater_1.14.0 SingleCellExperiment_1.8.0 SummarizedExperiment_1.16.0
[17] DelayedArray_0.12.0 BiocParallel_1.20.0 Biobase_2.46.0 GenomicRanges_1.38.0
[21] GenomeInfoDb_1.22.0 IRanges_2.20.1 S4Vectors_0.24.1 scmap_1.8.0
[25] phateR_1.0.4 Rmagic_2.0.3 Matrix_1.2-18 reticulate_1.16
[29] ggrepel_0.8.1 edgeR_3.28.0 limma_3.42.0 ggplot2_3.2.1
[33] BiocGenerics_0.32.0 Seurat_3.1.1 matrixStats_0.55.0 dplyr_0.8.3
[37] rPython_0.0-6 RJSONIO_1.3-1.3
loaded via a namespace (and not attached):
[1] backports_1.1.5 sn_1.5-4 plyr_1.8.4 igraph_1.2.4.2 lazyeval_0.2.2
[6] splines_3.6.1 crosstalk_1.0.0 listenv_0.8.0 TH.data_1.0-10 digest_0.6.23
[11] htmltools_0.4.0 gdata_2.18.0 magrittr_1.5 memoise_1.1.0 cluster_2.1.0
[16] ROCR_1.0-7 globals_0.12.5 RcppParallel_4.4.4 R.utils_2.9.2 sandwich_2.5-1
[21] colorspace_1.4-1 rappdirs_0.3.1 crayon_1.3.4 RCurl_1.95-4.12 jsonlite_1.6
[26] zeallot_0.1.0 survival_3.1-8 zoo_1.8-6 ape_5.3 glue_1.3.1
[31] gtable_0.3.0 zlibbioc_1.32.0 XVector_0.26.0 leiden_0.3.1 BiocSingular_1.2.0
[36] future.apply_1.3.0 scales_1.1.0 mvtnorm_1.0-11 bibtex_0.4.2 metap_1.2
[41] plotrix_3.7-7 xtable_1.8-4 proxy_0.4-23 rsvd_1.0.2 SDMTools_1.1-221.2
[46] tsne_0.1-3 htmlwidgets_1.5.1 httr_1.4.1 gplots_3.0.1.1 RColorBrewer_1.1-2
[51] TFisher_0.2.0 ica_1.0-2 farver_2.0.1 pkgconfig_2.0.3 R.methodsS3_1.7.1
[56] locfit_1.5-9.1 later_1.0.0 labeling_0.3 tidyselect_0.2.5 rlang_0.4.2
[61] reshape2_1.4.3 munsell_0.5.0 tools_3.6.1 ggridges_0.5.1 fastmap_1.0.1
[66] stringr_1.4.0 yaml_2.2.0 npsurv_0.4-0 fitdistrplus_1.0-14 caTools_1.17.1.3
[71] randomForest_4.6-14 purrr_0.3.3 RANN_2.6.1 pbapply_1.4-2 future_1.15.1
[76] nlme_3.1-142 mime_0.7 R.oo_1.23.0 compiler_3.6.1 rstudioapi_0.10
[81] beeswarm_0.2.3 png_0.1-7 e1071_1.7-3 lsei_1.2-0 tibble_2.1.3
[86] stringi_1.4.3 RSpectra_0.16-0 lattice_0.20-38 googleVis_0.6.4 multtest_2.42.0
[91] vctrs_0.2.0 mutoss_0.1-12 pillar_1.4.2 lifecycle_0.1.0 Rdpack_0.11-0
[96] lmtest_0.9-37 BiocNeighbors_1.4.1 RcppAnnoy_0.0.14 data.table_1.12.6 cowplot_1.0.0
[101] bitops_1.0-6 irlba_2.3.3 gbRd_0.4-11 httpuv_1.5.2 R6_2.4.1
[106] promises_1.1.0 gridExtra_2.3 vipor_0.4.5 codetools_0.2-16 MASS_7.3-51.4
[111] gtools_3.8.1 assertthat_0.2.1 withr_2.1.2 sctransform_0.2.0 mnormt_1.5-5
[116] multcomp_1.4-10 GenomeInfoDbData_1.2.2 tidyr_1.0.0 class_7.3-15 DelayedMatrixStats_1.8.0
[121] Rtsne_0.15 shiny_1.4.0 numDeriv_2016.8-1.1 ggbeeswarm_0.6.0