diff --git a/docs/data_conversion.md b/docs/data_conversion.md index aeb71c15..8da9862e 100644 --- a/docs/data_conversion.md +++ b/docs/data_conversion.md @@ -6,6 +6,7 @@ to only apply conversion where needed. Data files can be imported by drag-and-dr the mzmine graphical user interface or using the _import MS data_ module. **Supported raw data formats include:** + - Bruker Daltonics (.d and .tdf/tsf) - Thermo Fisher (.raw) - Waters (.raw folders) @@ -18,7 +19,7 @@ the mzmine graphical user interface or using the _import MS data_ module. !!! warning - Some vendor data formats are only supported on specific operating systems due to the limited + Some vendor data formats are **only supported** on specific **operating systems** due to the limited support by their respective data access libraries. All data formats are supported on Windows and many on Linux (see full [compatibility list here](system_requirements.md#compatibility)). Many data formats are unsupported on macOS, requiring data conversion to open formats, usually @@ -34,6 +35,7 @@ While our team is expanding the native data support for all major vendor formats install MSConvert for some formats. This will grant direct access to these files and mzmine will use MSConvert with some internal optimizations to load data files in the background. Formats that currently require MSConvert for direct support include: + - Agilent (.d) - Sciex (.wiff/.wiff2) - Shimadzu (.lcd) diff --git a/docs/system_requirements.md b/docs/system_requirements.md index dd6e3bc8..9cea4dec 100644 --- a/docs/system_requirements.md +++ b/docs/system_requirements.md @@ -32,7 +32,7 @@ permissions. !!! Info Processing speed scales with CPU cores/threads and speed of the SSD for temporary files. We recommend setting the temporary files directory to a fast, secondary SSD in the mzmine - preferences (CTRL+P, **Project -> Preferences**). (see [](getting_started.md#set-user-preferences)) + preferences (CTRL+P, **Project → Preferences**). (see [](getting_started.md#set-user-preferences)) ## Software requirements @@ -76,9 +76,11 @@ Read more about data support and [data conversion](data_conversion.md). Some libraries for the raw data support for vendor-specific formats are only available for Windows. The Linux version **supports** raw data formats from: + - **Thermo**, **Bruker**, **Waters** Data from other Vendors may need to be **converted** to the open .mzML format before, including: + - **Agilent**, **Sciex**, **Shimadzu**, **MOBILion** ### macOS @@ -86,7 +88,9 @@ Data from other Vendors may need to be **converted** to the open .mzML format be Some libraries for the raw data support for vendor-specific formats are only available for Windows and Linux. The macOS version **supports** raw data formats from: + - Thermo Data from other Vendors may need to be **converted** to the open .mzML format before, including: + - Agilent, Sciex, Shimadzu, MOBILion, Bruker, Waters