bug fix #779
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: unittest | |
| on: | |
| - push | |
| - pull_request | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| max-parallel: 4 | |
| matrix: | |
| python-version: [3.8] | |
| # TODO: We probably should switch to using the Docker version. | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh; | |
| bash miniconda.sh -b -p $HOME/miniconda || true | |
| export PATH="$HOME/miniconda/bin:$PATH" | |
| conda config --set always_yes yes --set changeps1 no | |
| conda update -q conda | |
| conda create -n usi -c conda-forge -c bioconda -c defaults flake8 \ | |
| flask flex-swagger gunicorn locust lxml matplotlib numba numpy \ | |
| pillow pytest pytest-xdist pyzbar qrcode rdkit requests \ | |
| requests-cache scipy spectrum_utils werkzeug zbar | |
| apt-get update -y && apt-get install -y git-core | |
| source activate usi | |
| pip install "git+https://github.com/berlinguyinca/spectra-hash.git#subdirectory=python" | |
| pip install celery celery-once joblib | |
| echo "source activate usi" > ~/.bashrc | |
| - name: Run unit and integration tests | |
| run: | | |
| export PATH="$HOME/miniconda/bin:$PATH" | |
| export PYTHONPATH=${PYTHONPATH}:. | |
| source ~/.bashrc | |
| pytest -n 4 ./test/ |