diff --git a/.babelrc b/.babelrc.json
similarity index 100%
rename from .babelrc
rename to .babelrc.json
diff --git a/.docs/Readme.hbs b/.docs/Readme.hbs
deleted file mode 100644
index 6e08e55..0000000
--- a/.docs/Readme.hbs
+++ /dev/null
@@ -1,102 +0,0 @@
-# [DEMO](https://mljs.github.io/libsvm/)
-
-Port of to port libsvm v3.22 using [emscripten](https://github.com/kripken/emscripten) , for usage in the browser or nodejs. 2 build targets: asm and WebAssembly.
-
-What is libsvm?
-libsvm is a [c++ library](https://github.com/cjlin1/libsvm) developped by Chih-Chung Chang and Chih-Jen Lin that allows to do support vector machine (aka SVM) classification and regression.
-
-Resources about libsvm:
-- [libsvm website](https://www.csie.ntu.edu.tw/~cjlin/libsvm/)
-- [libsvm github repository](https://github.com/cjlin1/libsvm)
-- [Wikipedia article](https://en.wikipedia.org/wiki/Support_vector_machine)
-- Chih-Chung Chang and Chih-Jen Lin, LIBSVM : a library for support vector machines. ACM Transactions on Intelligent Systems and Technology, 2:27:1--27:27, 2011.
-
-
-
-# Usage
-## Install
-```bash
-npm install libsvm-js
-```
-
-## Load
-The main entry point loads the WebAssembly build and is asynchronous.
-```js
-require('libsvm-js').then(SVM => {
- const svm = new SVM(); // ...
-});
-```
-
-There is an alternative entry point if you want to use asm build. This entrypoint is synchronous.
-```js
-const SVM = require('libsvm-js/asm');
-const svm = new SVM(); // ...
-```
-
-## Load in a web browser
-The npm package contains a bundle for the browser that works with AMD and browser globals. There is one bundle for the asm build and another for the web assembly build. They are located in the `dist/browser` directory of the package. You can load them into your web page with a `script` tag. For the web assembly module, make sure that the libsvm.wasm file is served from the same relative path as the js file.
-
-## Basic usage
-This example illustrates how to use the library to train and use an SVM classifier.
-```js
-
-async function xor() {
- const SVM = await
- require('libsvm-js');
- const svm = new SVM({
- kernel: SVM.KERNEL_TYPES.RBF, // The type of kernel I want to use
- type: SVM.SVM_TYPES.C_SVC, // The type of SVM I want to run
- gamma: 1, // RBF kernel gamma parameter
- cost: 1 // C_SVC cost parameter
- });
-
- // This is the xor problem
- //
- // 1 0
- // 0 1
- const features = [[0, 0], [1, 1], [1, 0], [0, 1]];
- const labels = [0, 0, 1, 1];
- svm.train(features, labels); // train the model
- const predictedLabel = svm.predictOne([0.7, 0.8]);
- console.log(predictedLabel) // 0
-}
-
-xor().then(() => console.log('done!'));
-```
-
-# Benchmarks
-You can compare the performance of the library in various environments. Run `npm run benchmark` to run the benchmarks with native c/c++ code and with the compiled code with your local version of node.js. For browser performance, go to the [web benchmark page](https://mljs.github.io/libsvm/#benchmarks).
-
-Speed is mainly affected by the javascript engine that compiles it. Since WebAssembly has been stabilized and is an optimization phase, more recent engines are almost always faster.
-
-Speed is also affected by the version of emscripten that generated the build or the options used in the build. I will try to keep up with any improvement that might significantly impact the performance.
-
-## Cross-validation benchmark
-I report the results here for the cross-validation benchmark on the iris dataset to get a feeling for how performance compares on different platforms. There are other benchmarks that can be run from the terminal in node.js or in the browser. The performance results are given relative to how they run natively (with compiled c++ code). The benchmarks only consider runtime performance, not load and parse performance.
-
-| Platform | Rel asm perf | Rel wasm perf |
-| --- | --- | --- |
-| Native | 100% | 100% |
-| Node.js 8.1.2 | 34.2% | 52.6% |
-| Node.js v7.10.0 | 14.4% | N/A |
-| Chrome 59.0.3071.115 | 36.2% | 51.3% |
-| Firefox 54.0 | 35.5% | 70.4% |
-
-
-# What are asm and WebAssembly ?
-From [asmjs.org](http;//asmjs.org)
-> asm is an optimizable subset of javascript.
-
-From [webassembly.org](http://webassembly.org)
-> WebAssembly or wasm is a new portable, size- and load-time-efficient format suitable for compilation to the web
-
-# Should I use asm or WebAssembly ?
-Both. You should try to use WebAssembly first and fall back to asm in order to support all browsers.
-
-WebAssembly is currently supported in the latest stable versions of Chrome, Firefox and on preview versions of Safari and Edge.
-
-# API Documentation
-{{>main}}
-
-# LICENSE
-BSD-3-Clause
diff --git a/.github/workflows/documentationjs.yml b/.github/workflows/documentationjs.yml
new file mode 100644
index 0000000..0ae90e1
--- /dev/null
+++ b/.github/workflows/documentationjs.yml
@@ -0,0 +1,21 @@
+name: Deploy documentation.js on GitHub pages
+
+on:
+ workflow_dispatch:
+ release:
+ types: [published]
+
+jobs:
+ deploy:
+ runs-on: ubuntu-latest
+ steps:
+ - uses: actions/checkout@v2
+ - name: Build documentation
+ uses: zakodium/documentationjs-action@v1
+ - name: Deploy to GitHub pages
+ uses: JamesIves/github-pages-deploy-action@releases/v4
+ with:
+ token: ${{ secrets.BOT_TOKEN }}
+ branch: gh-pages
+ folder: docs
+ clean: true
diff --git a/.github/workflows/nodejs.yml b/.github/workflows/nodejs.yml
new file mode 100644
index 0000000..4583a89
--- /dev/null
+++ b/.github/workflows/nodejs.yml
@@ -0,0 +1,15 @@
+name: Node.js CI
+
+on:
+ push:
+ branches:
+ - master
+ pull_request:
+
+jobs:
+ nodejs:
+ # Documentation: https://github.com/zakodium/workflows#nodejs-ci
+ uses: zakodium/workflows/.github/workflows/nodejs.yml@nodejs-v1
+ with:
+ node-version-matrix: "[12, 14, 16]"
+ npm-test-command: "npm run test-mocha"
\ No newline at end of file
diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml
new file mode 100644
index 0000000..29735ef
--- /dev/null
+++ b/.github/workflows/release.yml
@@ -0,0 +1,16 @@
+name: Release
+
+on:
+ push:
+ branches:
+ - master
+
+jobs:
+ release:
+ # Documentation: https://github.com/zakodium/workflows#release
+ uses: zakodium/workflows/.github/workflows/release.yml@release-v1
+ with:
+ npm: true
+ secrets:
+ github-token: ${{ secrets.BOT_TOKEN }}
+ npm-token: ${{ secrets.NPM_BOT_TOKEN }}
diff --git a/.prettierrc.json b/.prettierrc.json
new file mode 100644
index 0000000..a23e760
--- /dev/null
+++ b/.prettierrc.json
@@ -0,0 +1,7 @@
+{
+ "arrowParens": "always",
+ "semi": true,
+ "singleQuote": true,
+ "tabWidth": 2,
+ "trailingComma": "all"
+}
diff --git a/History.md b/CHANGELOG.md
similarity index 73%
rename from History.md
rename to CHANGELOG.md
index f86e01b..220f8dd 100644
--- a/History.md
+++ b/CHANGELOG.md
@@ -1,46 +1,38 @@
+# Changelog
+
-## [0.2.1](https://github.com/mljs/libsvm/compare/v0.2.0...v0.2.1) (2018-05-24)
+## [0.2.1](https://github.com/mljs/libsvm/compare/v0.2.0...v0.2.1) (2018-05-24)
### Bug Fixes
-* use prepare instead of preinstall for git submodule installation ([d61f5f8](https://github.com/mljs/libsvm/commit/d61f5f8))
-
-
+- use prepare instead of preinstall for git submodule installation ([d61f5f8](https://github.com/mljs/libsvm/commit/d61f5f8))
-# [0.2.0](https://github.com/mljs/libsvm/compare/v0.1.3...v0.2.0) (2018-04-04)
-
+# [0.2.0](https://github.com/mljs/libsvm/compare/v0.1.3...v0.2.0) (2018-04-04)
-## [0.1.3](https://github.com/mljs/libsvm/compare/v0.1.2...v0.1.3) (2017-12-12)
-
+## [0.1.3](https://github.com/mljs/libsvm/compare/v0.1.2...v0.1.3) (2017-12-12)
-## [0.1.2](https://github.com/mljs/libsvm/compare/v0.1.1...v0.1.2) (2017-07-25)
-
+## [0.1.2](https://github.com/mljs/libsvm/compare/v0.1.1...v0.1.2) (2017-07-25)
-## [0.1.1](https://github.com/mljs/libsvm/compare/v0.1.0...v0.1.1) (2017-07-06)
-
+## [0.1.1](https://github.com/mljs/libsvm/compare/v0.1.0...v0.1.1) (2017-07-06)
-# 0.1.0 (2017-06-02)
+# 0.1.0 (2017-06-02)
### Bug Fixes
-* this binding in canvas click callback ([870f4b6](https://github.com/mljs/libsvm/commit/870f4b6))
-
+- this binding in canvas click callback ([870f4b6](https://github.com/mljs/libsvm/commit/870f4b6))
### Features
-* add crossValidation ([1799a64](https://github.com/mljs/libsvm/commit/1799a64))
-* serialize and deserialize model ([fcf1dc3](https://github.com/mljs/libsvm/commit/fcf1dc3))
-
-
-
+- add crossValidation ([1799a64](https://github.com/mljs/libsvm/commit/1799a64))
+- serialize and deserialize model ([fcf1dc3](https://github.com/mljs/libsvm/commit/fcf1dc3))
diff --git a/package-lock.json b/package-lock.json
deleted file mode 100644
index fe914fe..0000000
--- a/package-lock.json
+++ /dev/null
@@ -1,12801 +0,0 @@
-{
- "name": "libsvm-js",
- "version": "0.2.1",
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- "requires": true,
- "dependencies": {
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- "dev": true,
- "requires": {
- "chalk": "^2.0.0",
- "esutils": "^2.0.2",
- "js-tokens": "^3.0.0"
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- "dependencies": {
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- "dev": true,
- "requires": {
- "color-convert": "^1.9.0"
- }
- },
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- "dev": true,
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- "escape-string-regexp": "^1.0.5",
- "supports-color": "^4.0.0"
- }
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- "has-flag": {
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- "dev": true,
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diff --git a/package.json b/package.json
index e971c10..aa295c5 100644
--- a/package.json
+++ b/package.json
@@ -26,8 +26,10 @@
"eslint": "eslint src/loadSVM.js demos examples",
"eslint-fix": "eslint --fix src/loadSVM.js demos examples",
"prepare": "git submodule init && git submodule update",
+ "prettier": "prettier --check src",
+ "prettier-write": "prettier --write src",
"start": "webpack-dev-server --config webpack/webpack.config.js",
- "test": "npm run test-mocha && npm run eslint",
+ "test": "npm run test-mocha && npm run eslint && npm run prettier",
"test-mocha": "mocha --require should --recursive test"
},
"repository": {
@@ -51,68 +53,65 @@
"homepage": "https://github.com/mljs/libsvm#readme",
"dependencies": {},
"devDependencies": {
- "babel-core": "^6.26.0",
+ "babel-core": "^6.26.3",
"babel-eslint": "^8.0.3",
- "babel-loader": "^7.1.2",
- "babel-plugin-lodash": "^3.3.2",
+ "babel-loader": "^8.2.3",
+ "babel-plugin-lodash": "^3.3.4",
"babel-plugin-syntax-dynamic-import": "^6.18.0",
"babel-plugin-transform-object-rest-spread": "^6.26.0",
"babel-plugin-transform-runtime": "^6.23.0",
"babel-preset-babili": "^0.1.4",
- "babel-preset-env": "^1.6.1",
+ "babel-preset-env": "^1.7.0",
"babel-preset-react": "^6.24.1",
- "bootstrap": "4.0.0-alpha.6",
- "chroma-js": "^1.3.4",
- "cli-table": "^0.3.1",
- "css-loader": "^0.28.7",
- "eslint": "^4.19.1",
- "eslint-config-cheminfo": "^1.17.2",
+ "bootstrap": "5.1.3",
+ "chroma-js": "^2.4.2",
+ "cli-table": "^0.3.11",
+ "css-loader": "^6.6.0",
+ "eslint": "^8.10.0",
+ "eslint-config-cheminfo": "^7.2.2",
"eslint-config-neptun-react": "^1.0.2",
- "eslint-plugin-import": "^2.10.0",
- "eslint-plugin-jest": "^21.15.0",
- "eslint-plugin-no-only-tests": "^2.0.0",
- "eslint-plugin-react": "^7.5.1",
- "file-loader": "^0.11.2",
+ "file-loader": "^6.2.0",
"font-awesome": "^4.7.0",
"font-awesome-webpack": "^0.0.5-beta.2",
- "gh-pages": "^1.1.0",
- "imports-loader": "^0.7.1",
- "jquery": "^3.2.1",
- "jsdoc-to-markdown": "^3.0.3",
- "less": "^2.7.3",
- "lodash-es": "^4.17.4",
- "lodash-webpack-plugin": "^0.11.4",
+ "gh-pages": "^3.2.3",
+ "imports-loader": "^3.1.1",
+ "jquery": "^3.6.0",
+ "jsdoc-to-markdown": "^7.1.1",
+ "less": "^4.1.2",
+ "lodash-es": "^4.17.21",
+ "lodash-webpack-plugin": "^0.11.6",
"lodash.omitby": "^4.6.0",
"lodash.range": "^3.2.0",
- "ml-dataset-iris": "^1.0.0",
- "ml-kernel": "^2.3.4",
+ "ml-dataset-iris": "^1.2.1",
+ "ml-kernel": "^3.0.0",
"ml-svm": "^2.1.2",
- "mocha": "^3.5.3",
+ "mocha": "^9.2.1",
"mocha-better-spec-reporter": "^3.1.0",
- "npm-run-all": "^4.1.2",
- "preact": "^8.2.6",
- "preact-compat": "^3.17.0",
- "react": "^15.6.2",
- "react-dom": "^15.6.2",
- "react-icons": "^2.2.7",
+ "npm-run-all": "^4.1.5",
+ "preact": "^10.6.6",
+ "preact-compat": "^3.19.0",
+ "prettier": "^2.5.1",
+ "react": "^17.0.2",
+ "react-dom": "^17.0.2",
+ "react-icons": "^4.3.1",
"react-loading-animation": "^1.4.0",
- "react-redux": "^5.0.6",
- "react-router": "^4.2.0",
- "react-router-dom": "^4.2.2",
- "redux": "^3.7.2",
- "redux-form": "^6.8.0",
- "redux-undo": "1.0.0-beta9-7",
- "reselect": "^2.5.4",
- "rimraf": "^2.6.2",
- "serviceworker-webpack-plugin": "^0.2.3",
- "should": "^11.2.0",
- "style-loader": "^0.18.2",
- "tether": "^1.4.3",
- "url-loader": "^0.5.9",
- "webpack": "^3.11.0",
- "webpack-bundle-analyzer": "^2.9.1",
- "webpack-dev-server": "^2.9.7",
+ "react-redux": "^7.2.6",
+ "react-router": "^6.2.2",
+ "react-router-dom": "^6.2.2",
+ "redux": "^4.1.2",
+ "redux-form": "^8.3.8",
+ "redux-undo": "1.0.1",
+ "reselect": "^4.1.5",
+ "rimraf": "^3.0.2",
+ "serviceworker-webpack-plugin": "^1.0.1",
+ "should": "^13.2.3",
+ "style-loader": "^3.3.1",
+ "tether": "^2.0.0",
+ "url-loader": "^4.1.1",
+ "webpack": "^5.69.1",
+ "webpack-bundle-analyzer": "^4.5.0",
+ "webpack-dev-server": "^4.7.4",
"webpack-visualizer-plugin": "^0.1.11",
- "worker-loader": "^0.8.1"
+ "worker-loader": "^3.0.8"
}
}