age-pset.xml

<?xml version="1.0" encoding="UTF-8"?>
<parameters>
  <format>1.0</format>
  <exportedByVersion>1.0.3</exportedByVersion>
  <gene>TRB</gene>
  <species>HomoSapiens</species>
  <qualityInterpretationStrategy>
    <illumina>20</illumina>
  </qualityInterpretationStrategy>
  <cdr3Extractor>
    <v>
      <extensionDirections>both</extensionDirections>
      <seedFrom>-4</seedFrom>
      <seedTo>1</seedTo>
      <minAlignmentMatches>12</minAlignmentMatches>
      <lengthTolerance>3</lengthTolerance>
    </v>
    <j>
      <extensionDirections>insideCDR3</extensionDirections>
      <seedFrom>-3</seedFrom>
      <seedTo>2</seedTo>
      <minAlignmentMatches>7</minAlignmentMatches>
      <lengthTolerance>2</lengthTolerance>
    </j>
    <d>
      <minLength>2</minLength>
      <searchForRC />
    </d>
    <upperCDR3LengthThreshold>100</upperCDR3LengthThreshold>
    <lowerCDR3LengthThreshold>10</lowerCDR3LengthThreshold>
    <strand>both</strand>
    <includeCysPhe />
  </cdr3Extractor>
  <cloneGenerator>
    <segmentInformationAggregationFactor>0.15</segmentInformationAggregationFactor>
    <maxErrorsInBadPoints>3</maxErrorsInBadPoints>
    <proportionalMapping />
  </cloneGenerator>
  <clusterizer>
    <type>oneMismatch</type>
    <maxClusterizationRatio>0.1</maxClusterizationRatio>
  </clusterizer>
</parameters>