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‎__init__.py

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# Copyright 2018 IBM All Rights Reserved.
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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#
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# http://www.apache.org/licenses/LICENSE-2.0
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#
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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# *****************************************************************
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#
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# (C) Copyright Merative US L.P. and others 2018, 2023
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#
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# SPDX-License-Identifier: Apache-2.0
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#
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# *****************************************************************
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from .version import __version__
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from .version import __version__

‎annotator_for_clinical_data_v1.py

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‎common.py

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# *****************************************************************
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#
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# (C) Copyright Merative US L.P. and others 2019, 2023
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#
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# SPDX-License-Identifier: Apache-2.0
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#
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# *****************************************************************
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"""
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This module provides common methods for use across all service modules.
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"""
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import platform
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from .version import __version__
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HEADER_NAME_USER_AGENT = 'User-Agent'
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SDK_NAME = 'whcs-python-sdk'
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def get_system_info():
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"""
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Get information about the system to be inserted into the User-Agent header
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"""
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return '{0} {1} {2}'.format(platform.system(), # OS
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platform.release(), # OS version
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platform.python_version()) # Python version
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def get_user_agent():
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"""
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Get the value to be sent in the User-Agent header
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"""
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return USER_AGENT
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USER_AGENT = '{0}-{1} {2}'.format(SDK_NAME, __version__, get_system_info())
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def get_sdk_headers(service_name, service_version, operation_id):
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"""
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Get the request headers to be sent in requests by the SDK
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"""
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headers = {}
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headers[HEADER_NAME_USER_AGENT] = get_user_agent()
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return headers

‎config.ini

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# *****************************************************************
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#
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# (C) Copyright Merative US L.P. and others 2018, 2023
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#
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# SPDX-License-Identifier: Apache-2.0
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#
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# *****************************************************************
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[settings]
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base_url =
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key =
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iam_url =
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version = 2021-08-27
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logging_level = ERROR
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disable_ssl = False
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flow = wh_acd.ibm_clinical_insights_v1.0_standard_flow
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profile = wh_acd.ibm_clinical_insights_v1.0_profile

‎pylint.sh

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#!/bin/bash
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# *****************************************************************
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#
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# (C) Copyright Merative US L.P. and others 2018, 2023
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#
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# SPDX-License-Identifier: Apache-2.0
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#
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# *****************************************************************
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python -m pylint ibm_whcs_sdk/annotator_for_clinical_data ibm_whcs_sdk/annotator_for_clinical_data/tests/unit ibm_whcs_sdk/annotator_for_clinical_data/tests/integration
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python -m pylint ibm_whcs_sdk/insights_for_medical_literature ibm_whcs_sdk/insights_for_medical_literature/tests/unit ibm_whcs_sdk/insights_for_medical_literature/tests/integration

‎setup.py

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# coding: utf-8
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# Copyright 2018 IBM All Rights Reserved.
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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#
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# http://www.apache.org/licenses/LICENSE-2.0
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#
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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# *****************************************************************
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#
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# (C) Copyright Merative US L.P. and others 2018, 2023
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#
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# SPDX-License-Identifier: Apache-2.0
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#
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# *****************************************************************
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from setuptools import setup, find_packages
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from setuptools.command.test import test as TestCommand

‎test_acd_acdflow_model.py

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# *****************************************************************
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#
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# (C) Copyright Merative US L.P. and others 2018, 2023
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#
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# SPDX-License-Identifier: Apache-2.0
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#
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# *****************************************************************
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import ibm_whcs_sdk.annotator_for_clinical_data as wh
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def test_AcdFlow_model():
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annotator_flows_list = wh.AnnotatorFlow(wh.Flow())
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model = wh.AcdFlow(id="id", name="name", description="describe", annotator_flows=[annotator_flows_list])
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assert model.__str__() is not None

‎test_acd_acdprofile_model.py

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# *****************************************************************
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#
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# (C) Copyright Merative US L.P. and others 2018, 2023
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#
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# SPDX-License-Identifier: Apache-2.0
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#
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# *****************************************************************
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import ibm_whcs_sdk.annotator_for_clinical_data as wh
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def test_AcdProfile_model():
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annotators_list = []
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model = wh.AcdProfile(id="id", name="name", description="very good", annotators=annotators_list)
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assert model.__str__() is not None

‎test_acd_allergy_medication_model.py

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# *****************************************************************
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#
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# (C) Copyright Merative US L.P. and others 2018, 2023
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#
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# SPDX-License-Identifier: Apache-2.0
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#
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# *****************************************************************
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import ibm_whcs_sdk.annotator_for_clinical_data as wh
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def test_AllergyMedication_model():
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medication_data = wh.MedicationAnnotation()
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model = wh.AllergyMedication(id="id", type="type", uid=1, begin=2, end=3, covered_text="covered", negated=False,
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hypothetical=False, section_normalized_name="snn", section_surface_form="ssf",
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medication=[medication_data])
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assert model.__str__() is not None

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