Update-release 3.5.26

What's Changed

Patching

• Post 3.5.24 patches by @willend in #1861
• Typo fixes from @farhi during FZJ hackathon by @willend in #1941

Feature updates

Common:

• Update rootmccode to work with new version of ROOT by @ebknudsen in #1862
• Return None in mctest if no mccode.sim was written by @willend in #1885
• Add wrapper for mc/mxdisplay-cad on Windows by @willend in #1888
• Input flag -y / --yes applies all instrument parameter default values by @willend in #1914
• Fix issue 1883 by setting mpirun --mca params by @willend in #1884
• PowderN: remove a static variable declare from SHARE section by @willend in #1945
• Add COPY SHARE to Diaphragm Slit-alias-comp + add in McXtrace by @willend in #1950
• @farhi mcgui tooltip edits from #1952 by @willend in #1953
• PowderN and SX fixes: cif2hkl now searches correctly files using Open_File/real path, and sets 'barns=1' by @farhi in #1952
• Correct implementation to use unit64_t (achieves a correct 64bit RNG also on Windows...) by @willend in #1955, #1956, #1966

McStas:

• Full adaptation of "spin-component nullification" after "spin up/down measurement" by @willend in #1886
• Allow further geometries for He3 cell component by @willend in #1915
• Contributed component Source_custom by @pablogila in #1911, #1946
• Update MCPL_input.comp by @g5t in #1924
• Comp updates from work on ESS SKADI by @willend in #1948

McXtrace:

• McXtrace: data: refactor reflec_xraydb.py: refactor by @farhi in #1897
• McXtrace: work in data/reflec_xraydb script by @farhi in #1916
• mcxtrace:powderN: Update PowderN.comp: reduce nb of printed warnings by @farhi in #1919
• McXtrace: Fluorescence handling ala PowderN by @willend in #1942
• McXtrace: samples: add Fluo+PowderN component by @farhi in #1951

CI/testing

• Expand nighty test suite to macOS and Windows by @willend in #1870
• Fix paths in mcxtrace testsuite script by @willend in #1871
• Try to run the basic test using mpich on macOS by @willend in #1873
• Enable mpi for windows in test CI by @willend in #1875
• Enable MPI, NCrystal and MCPL in windows-test-CI by @willend in #1876, @willend in #1877
• Add libnexus-dev on Ubuntu nightly test by @willend in #1878
• Correct path for mcxtrace nightly testsuite by @willend in #1879
• First stab at adding basic windows MSVC test by @tkittel in #1898
• Disable macos/openmpi in favour of macos/mpich for now by @willend in #1906

Debian packages

• A few minor commits for Install (sudo -E) and libgsl dependency. by @farhi in #1867

macOS bundle

• MacInstall: add comment on forcing open permission with command by @farhi in #1890

• Suppress const char in the cif2hkl fcts by

• Suppess various warnings from msvc on Windows by @willend in #1957, #1958, #1959, #1960, #1961

• Use MCPL 2.0 on all platforms, by @willend in #1962, #1964, #1964

New Contributors

• @pablogila made their first contribution in #1911

Full Changelog: v3.5.24...v3.5.26

v3.5.25 - incremental update before hackathon

What's Changed

• V3.5.24 release doc updates etc by @willend in #1856
• Fix typo by @willend in #1857
• Don't internally build cif2hkl by @willend in #1858
• Correct notes on MCPL and McStasScript by @willend in #1859
• No more McStasScript via pip, dammit by @willend in #1860
• Post 3.5.24 patches by @willend in #1861
• Tool folder spring cleaning by @willend in #1863
• More spring cleaning by @willend in #1864
• Shift org URLs by @willend in #1865
• Update rootmccode to work with new version of ROOT by @ebknudsen in #1862
• Add 'dtruss' on macOS in attempt to get info for #1866 by @willend in #1868
• Use macOS leaks binary for potential debug of #1866 by @willend in #1869
• A few minor commits for Install (sudo -E) and libgsl dependency. by @farhi in #1867
• Expand nighty test suite to macOS and Windows by @willend in #1870
• Fix paths in mcxtrace testsuite script by @willend in #1871
• Try to run the basic test using mpich on macOS by @willend in #1873
• NCrystal default branch was renamed from master to main by @tkittel in #1874
• Enable mpi for windows in test CI by @willend in #1875
• Enable MPI, NCrystal and MCPL in windows-test-CI by @willend in #1876
• Fixes to rectify remaining MCPL, NCrystal, gsl and xraylib by @willend in #1877
• Add libnexus-dev on Ubuntu nightly test by @willend in #1878
• Correct path for mcxtrace nightly testsuite by @willend in #1879
• Cppcheck hints by @willend in #1881
• Return to mpich on basictest by @willend in #1882
• Fix issue 1883 by setting mpirun --mca params by @willend in #1884
• Return None in mctest if no mccode.sim was written by @willend in #1885
• Full adaptation of "spin-component nullification" after "spin up/down measurement" by @willend in #1886
• Add wrapper for mc/mxdisplay-cad on Windows by @willend in #1888
• MacInstall: add comment on forcing open permission with command by @farhi in #1890
• Add component name in "segno" related Exit/Error statement by @willend in #1895
• McXtrace: data: refactor reflec_xraydb.py: refactor by @farhi in #1897
• First stab at adding basic windows MSVC test by @tkittel in #1898
• Doc correction for MCPL install-location in Windows legacy by @willend in #1900
• Restores MPIFLAGS configuration on non-windows platforms. by @willend in #1904
• Disable macos/openmpi in favour of macos/mpich for now by @willend in #1906
• 8GPU box software stack update by @willend in #1912
• Allow further geometries for He3 cell component by @willend in #1915
• McXtrace: work in data/reflec_xraydb script by @farhi in #1916
• Input flag -y / --yes applies all instrument parameter default values by @willend in #1914

Full Changelog: v3.5.24...v3.5.25

v3.5.24 Milestone with mcstas-antlr support, NCrystal on Windows

What's Changed

Important note

• McStas and McXtrace will soon change organisation-name on GitHub - from McStasMcXtrace -> mccode-dev

User interfaces and tools

• [Feature] mcgui/mxgui Let configuration dialogue spawn your EDITOR to edit your local mccode_config.json
  by @willend in #1838 (available also by --edit-user-config from mcrun/mxrun)
• [Feature] mcrun/mxrun: New switch --cogen to allow on-demand switch to non-standard code generator.
  See also interoperability with mccode-antlr below
  by @willend in #1851
• [Feature] mcrun/mxrun Solution for picking up code generator from PATH if not found where expected
  by @willend in #1840
• [Feature] pygen minor revision: Build importable make() function and call from generic notebook
  by @willend in #1827
• [Fix] Support Scintilla editor on Debian with Qt6
  by @willend in #1813
• [Fix] Drop hard-coded check for PyQt5
  by @willend in #1814
• [Fix] No more hidden Perl dependencies! (perl -> python 1-liner readlinkf())
  by @willend in #1824
• [Fix] too-restrictive mcdisplay/mxdisplay instrument line parsing
  by @g5t in #1834
• [Fix] Patches for mcdisplay/mxdisplay in Windows
  from @LelandWH #1853

Components and instruments

• [Fix] McStas Vertical_bender: Add max iteration criterion for while loop (default 1000).
  by @willend in #1815
• [Fix] McStas NCrystal_sample: Remove possible out-of-bounds memory access
  by @g5t in #1821
• [Fix] McStas Elliptic_guide_gravity and Pol_mirror: Minor comp revisions, suppresses compilation warnings from clang
  by @willend in #1826
• [Fix] McStas SNS_ARCS.instr edits
  by @willend in #1838
• [Fix] McStas ISIS_IMAT.instr DEPENDENCY " @NEXUSFLAGS@ " added
  by @willend in #1839
• [Fix] McStas Union_master Adjustment of default parameter
  by @willend in #1840
• [Fix] McStas Union-related fixes and imports from DMSC school
  by @willend in #1841
• [Fix] McStas Elliptical_guide_gravity did not work in GROUPS as it always SCATTERS
  by @mads-bertelsen in #1843
• [Fix] Monitor_nD on GPU: Adjustments for coherence between CPU and GPU particle lists
  by @willend in #1816

Core simulation toolkit

• [Feature] NeXus: sort comp instances by index and include comp parameter information
  by @willend in #1828
• [Fix] Increased stability in NeXus x wide MPI
  by @willend in #1811
• [Fix] Portability, Windows + cl.exe: Remove variable length array allocations for issue #1817
  by @g5t in #1819 and
  #1818 by @willend in #1822

Interfaces and interoperability with other codes

NCrystal

• Thanks to @tkittel for ping-pong on this :)
• [Feature] McStas 3.5.24 and later now depends on NCrystal 4.0.0 and later. NCrystal is now available also on Windows!
  by @willend in #1848 and #1855

mccode-antlr

• Thanks to @g5t for ping-pong on this :)
• [Feature] mccode-antlr is an alternative code-generator for McStas and McXtrace - a new development by @g5t and based on ANTLR instead of lex/yacc. The new tool is mainly written in python and thus has a lower barrier for changes in language syntax and code generation. The tool implementations mcstas-antlr and mcxtrace-antlr are thus a candidate implementations to potentially replace the classic mcstas and mcxtrace code generators in the future. Current status is that
  • McStas: mcstas-antlr is fully feature complete wrt. mcstas for CPU simulations and close to complete for GPU simulations
  • McXtrace: Not all instruments will compile using mcxtrace-antlr but basic functionality is in place
  • To try:
    1. Install mccode-antlr from conda-forge or via pip
    2. Adapt your configuration to use e.g. mcstas-antlr by
    • Setting the new --cogen=mcstas-antlr option in mcrun
    • Enable or edit the MCCOGEN field of mccode_config.json using the new Save/Edit configuration in mcgui
    • (The antlr tools default to download comps etc. to an internal cache: Add e.g. -I${MCSTAS} to prefer ingredients fromyour local library)
    3. Use the mcrun-antlr/mxrun-antlr tools provided directly by mccode-antlr

Platform support

• Debian/Ubuntu
  • [Fix] Make hidden numpy dependency explicit also on Debian by @willend in #1825
  • [Fix] McXtrace meta-pkgs for Debian add libgsl-dev as dependency by @farhi in #185
• Windows
  • [Feature] NCrystal is now available with McStas on Windows
  • [Info] Windows via cross-compiled .exeinstaller from mccode.org:
    Please place the MCPL-related .bat files from the extras folder in e.g. c:\mcstas-3.5.24\bin to enable MCPL
    (May require giving your user 'full access' permissions to the bin folder)
  • [Info] Windows via conda-forge: MCPL is not yet available but expected during the spring

Full Changelog: v3.5.16...v3.5.24

v3.5.23 February "scoop-up" release

What's Changed

• Post 3.5.16 minor Union fixes + NeXus x wide MPI by @willend in #1811
• Issue 1721 fix: Support Scintilla editor on Debian with Qt6 by @willend in #1813
• Drop hard-coded check for PyQt5 by @willend in #1814
• Add max iteration criterion for while loop (default 1000). by @willend in #1815
• Adjustments for coherence between CPU and GPU particle lists by @willend in #1816
• Remove variable length array allocations for #1817 by @g5t in #1819
• Fix typos in polyhedron.c by @g5t in #1820
• Remove NCrystal_sample.comp possible out-of-bounds memory access by @g5t in #1821
• Fix for #1818 by @willend in #1822
• Sync variants of Monitor_nD acc/noacc McStas, McXtrace by @willend in #1823
• perl -> python 1-liner readlinkf() by @willend in #1824
• Make hidden numpy dependency explicit also on Debian by @willend in #1825
• Minor comp revisions, suppresses compilation warnings from clang by @willend in #1826
• pygen minor revision: Build importable make() function and call from generic notebook by @willend in #1827
• Sync with main by @willend in #1829
• Software stack update for 8-way GPU box by @willend in #1830
• Software stack update by @willend in #1831
• Switch ZLIB FETCH->IFAVAILABLE for cros-platform Windows by @willend in #1832
• [Fix] too-restrictive McDisplay instrument line parsing by @g5t in #1834
• Sync this NeXus dev branch against main by @willend in #1836
• Adapt tooling to edit json config in EDITOR + SNS_ARCS edits by @willend in #1838
• NeXus: sort comp instances by index and include comp parameter information by @willend in #1828
• Enable DEPENDENCY " @NEXUSFLAGS@ " in IMAT instr by @willend in #1839
• Param default adj Union_master + mcrun fallback solution for picking up code generator from PATH by @willend in #1840
• Union-related fixes and imports from DMSC school issue by @willend in #1841
• Elliptical_guide_gravity did not work in GROUPS as it always SCATTERS by @mads-bertelsen in #1843
• Update README.md by @willend in #1845
• Update README.md by @willend in #1846
• Various NCrystal 4.0.0 related patches by @willend in #1848
• Ncrystal 4 patches - remove from cross-compile build by @willend in #1849
• Config fixes openacc by @willend in #1850
• Add switch --cogen to allow on-demand switch betwen mcstas/mcstas-antlr by @willend in #1851
• meta-pkgs:deb:mcxtrace: add libgsl-dev as dependency by @farhi in #1852
• Gzip biggest McXtrace datafiles by @willend in #1847

Full Changelog: v3.5.16...v3.5.23

v3.5.22 minor update

What's Changed

• Post 3.5.16 minor Union fixes + NeXus x wide MPI by @willend in #1811
• Issue 1721 fix: Support Scintilla editor on Debian with Qt6 by @willend in #1813
• Drop hard-coded check for PyQt5 by @willend in #1814
• Add max iteration criterion for while loop (default 1000). by @willend in #1815
• Adjustments for coherence between CPU and GPU particle lists by @willend in #1816
• Remove variable length array allocations for #1817 by @g5t in #1819
• Fix typos in polyhedron.c by @g5t in #1820
• Remove NCrystal_sample.comp possible out-of-bounds memory access by @g5t in #1821
• Fix for #1818 by @willend in #1822
• Sync variants of Monitor_nD acc/noacc McStas, McXtrace by @willend in #1823
• perl -> python 1-liner readlinkf() by @willend in #1824
• Make hidden numpy dependency explicit also on Debian by @willend in #1825
• Minor comp revisions, suppresses compilation warnings from clang by @willend in #1826
• pygen minor revision: Build importable make() function and call from generic notebook by @willend in #1827
• Sync with main by @willend in #1829
• Software stack update for 8-way GPU box by @willend in #1830
• Software stack update by @willend in #1831
• Switch ZLIB FETCH->IFAVAILABLE for cros-platform Windows by @willend in #1832
• [Fix] too-restrictive McDisplay instrument line parsing by @g5t in #1834
• Sync this NeXus dev branch against main by @willend in #1836
• Adapt tooling to edit json config in EDITOR + SNS_ARCS edits by @willend in #1838
• NeXus: sort comp instances by index and include comp parameter information by @willend in #1828
• Enable DEPENDENCY " @NEXUSFLAGS@ " in IMAT instr by @willend in #1839
• Param default adj Union_master + mcrun fallback solution for picking up code generator from PATH by @willend in #1840
• Union-related fixes and imports from DMSC school issue by @willend in #1841
• Elliptical_guide_gravity did not work in GROUPS as it always SCATTERS by @mads-bertelsen in #1843
• Update README.md by @willend in #1845
• Update README.md by @willend in #1846
• Various NCrystal 4.0.0 related patches by @willend in #1848

Full Changelog: v3.5.16...v3.5.22

v3.5.21 minor update

What's Changed

• Post 3.5.16 minor Union fixes + NeXus x wide MPI by @willend in #1811
• Issue 1721 fix: Support Scintilla editor on Debian with Qt6 by @willend in #1813
• Drop hard-coded check for PyQt5 by @willend in #1814
• Add max iteration criterion for while loop (default 1000). by @willend in #1815
• Adjustments for coherence between CPU and GPU particle lists by @willend in #1816
• Remove variable length array allocations for #1817 by @g5t in #1819
• Fix typos in polyhedron.c by @g5t in #1820
• Remove NCrystal_sample.comp possible out-of-bounds memory access by @g5t in #1821
• Fix for #1818 by @willend in #1822
• Sync variants of Monitor_nD acc/noacc McStas, McXtrace by @willend in #1823
• perl -> python 1-liner readlinkf() by @willend in #1824
• Make hidden numpy dependency explicit also on Debian by @willend in #1825
• Minor comp revisions, suppresses compilation warnings from clang by @willend in #1826
• pygen minor revision: Build importable make() function and call from generic notebook by @willend in #1827
• Sync with main by @willend in #1829
• Software stack update for 8-way GPU box by @willend in #1830
• Software stack update by @willend in #1831
• Switch ZLIB FETCH->IFAVAILABLE for cros-platform Windows by @willend in #1832
• [Fix] too-restrictive McDisplay instrument line parsing by @g5t in #1834
• Sync this NeXus dev branch against main by @willend in #1836
• Adapt tooling to edit json config in EDITOR + SNS_ARCS edits by @willend in #1838
• NeXus: sort comp instances by index and include comp parameter information by @willend in #1828
• Enable DEPENDENCY " @NEXUSFLAGS@ " in IMAT instr by @willend in #1839
• Param default adj Union_master + mcrun fallback solution for picking up code generator from PATH by @willend in #1840
• Union-related fixes and imports from DMSC school issue by @willend in #1841

Full Changelog: v3.5.16...v3.5.21

v3.5.20 minor update

What's Changed

• Post 3.5.16 minor Union fixes + NeXus x wide MPI by @willend in #1811
• Issue 1721 fix: Support Scintilla editor on Debian with Qt6 by @willend in #1813
• Drop hard-coded check for PyQt5 by @willend in #1814
• Add max iteration criterion for while loop (default 1000). by @willend in #1815
• Adjustments for coherence between CPU and GPU particle lists by @willend in #1816
• Remove variable length array allocations for #1817 by @g5t in #1819
• Fix typos in polyhedron.c by @g5t in #1820
• Remove NCrystal_sample.comp possible out-of-bounds memory access by @g5t in #1821
• Fix for #1818 by @willend in #1822
• Sync variants of Monitor_nD acc/noacc McStas, McXtrace by @willend in #1823
• perl -> python 1-liner readlinkf() by @willend in #1824
• Make hidden numpy dependency explicit also on Debian by @willend in #1825
• Minor comp revisions, suppresses compilation warnings from clang by @willend in #1826
• pygen minor revision: Build importable make() function and call from generic notebook by @willend in #1827
• Sync with main by @willend in #1829
• Switch ZLIB FETCH->IFAVAILABLE for cros-platform Windows by @willend in #1832
• [Fix] too-restrictive McDisplay instrument line parsing by @g5t in #1834
• Sync this NeXus dev branch against main by @willend in #1836
• Adapt tooling to edit json config in EDITOR + SNS_ARCS edits by @willend in #1838
• NeXus: sort comp instances by index and include comp parameter information by @willend in #1828

Full Changelog: v3.5.16...v3.5.20

v3.5.19 minor update

What's Changed

• Post 3.5.16 minor Union fixes + NeXus x wide MPI by @willend in #1811
• Issue 1721 fix: Support Scintilla editor on Debian with Qt6 by @willend in #1813
• Drop hard-coded check for PyQt5 by @willend in #1814
• Add max iteration criterion for while loop (default 1000). by @willend in #1815
• Adjustments for coherence between CPU and GPU particle lists by @willend in #1816
• Remove variable length array allocations for #1817 by @g5t in #1819
• Fix typos in polyhedron.c by @g5t in #1820
• Remove NCrystal_sample.comp possible out-of-bounds memory access by @g5t in #1821
• Fix for #1818 by @willend in #1822

Full Changelog: v3.5.16...v3.5.19

v3.5.18 New year 2025 minor release

What's Changed

• Post 3.5.16 minor Union fixes + NeXus x wide MPI by @willend in #1811
• Issue 1721 fix: Support Scintilla editor on Debian with Qt6 by @willend in #1813

Full Changelog: v3.5.16...v3.5.18

v3.5.17 Christmas break release 2024

What's Changed

• Release-doc updates etc. for 3.5.16 by @willend in #1800
• Update README.md by @willend in #1801
• Post 3.5.16 minor fixes by @willend in #1802
• Correct dumb typo by @willend in #1803
• Post 3.5.16 minor fixes by @willend in #1804
• Post 3.5.16 minor fixes by @willend in #1805
• Ditch binder links by @willend in #1806
• Align with main by @willend in #1810
• Post 3.5.16 minor Union fixes + NeXus x wide MPI by @willend in #1811

Full Changelog: v3.5.16...v3.5.17