Temporarily disable this instr from McXtrace tests #445
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| name: mcxtrace-conda-basictest | |
| on: | |
| push: | |
| pull_request: | |
| schedule: | |
| - cron: '55 23 * * 0' # 23:55 every Sunday | |
| workflow_dispatch: | |
| inputs: | |
| manual-debugging: | |
| type: boolean | |
| description: Launch manual debugging tmate for inspection (automatic in case of errors) | |
| default: false | |
| jobs: | |
| build: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - { os: ubuntu-latest, python: '3.12', mpi: 'openmpi' } | |
| - { os: ubuntu-latest, python: '3.12', mpi: 'mpich' } | |
| - { os: macos-latest, python: '3.12', mpi: 'openmpi' } | |
| - { os: macos-latest, python: '3.12', mpi: 'mpich' } | |
| - { os: windows-latest, python: '3.12', mpi: 'msmpi' } | |
| name: ${{ matrix.os }}.${{ matrix.mpi }}.python-${{ matrix.python }} | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| CC: ${{ matrix.CC }} | |
| CXX: ${{ matrix.CXX }} | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v5 | |
| with: | |
| path: src | |
| fetch-depth: 2 | |
| - name: Setup VS in shell Intel | |
| if: runner.os == 'Windows' | |
| uses: ilammy/msvc-dev-cmd@v1 | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| activate-environment: mcxtrace | |
| auto-update-conda: true | |
| conda-remove-defaults: true | |
| channels: conda-forge | |
| python-version: ${{ matrix.python }} | |
| - name: Setup conda | |
| id: setup-conda | |
| run: | | |
| ./src/devel/bin/mccode-create-conda-yml -m mcxtrace -n mcxtrace -o dependencies.yml | |
| conda env update --file dependencies.yml | |
| echo DONE | |
| - name: Check versions | |
| id: version-checks | |
| run: | | |
| which python3 | |
| python3 --version | |
| which cmake | |
| cmake --version | |
| if [ "$RUNNER_OS" != "Windows" ]; | |
| then | |
| echo C compiler: $CC | |
| $CC --version | |
| else | |
| echo C compiler: cl.exe | |
| cl.exe | |
| fi | |
| - name: Configure build and install mcxtrace | |
| id: mcxtrace-install | |
| run: | | |
| ./src/devel/bin/mccode-build-conda -m mcxtrace -s $PWD/src -b $PWD/build_mcxtrace | |
| - name: Post install openmpi hacks macOS | |
| id: post-install-openmpi-hacks-macOS | |
| if: runner.os == 'macOS' | |
| run: | | |
| if [ "${{ matrix.mpi }}" == "openmpi" ]; then | |
| sed -i.bak 's+mpirun+mpirun\ -mca\ regx\ naive\ --verbose\ --mca\ btl_tcp_if_include\ lo0+g' ${CONDA_PREFIX}/share/mcxtrace/tools/Python/mccodelib/mccode_config.json | |
| fi | |
| # Start of tests | |
| - name: Launch RNG test instrument | |
| id: RNG-test | |
| run: | | |
| set -e | |
| set -u | |
| set -x | |
| export MD5SUM="md5sum" | |
| if [ "$RUNNER_OS" == "macOS" ]; | |
| then | |
| export MD5SUM="md5" | |
| fi | |
| if [ "$RUNNER_OS" == "Windows" ]; | |
| then | |
| export SUFFIX=".bat" | |
| else | |
| export SUFFIX="" | |
| fi | |
| test -f ${CONDA_PREFIX}/bin/mcxtrace | |
| mcxtrace --version | |
| mxtest${SUFFIX} --instr=Test_RNG_rand01 --testdir=run_singletests --suffix=${{ matrix.mpi }} | |
| export SUM=`find run_singletests -name rngout.dat | xargs -n1 grep -v \# | ${MD5SUM} | cut -f1 -d\ ` | |
| export EXPECTED="f192ce4609e2225bf9d42ce9c5fa5a86" | |
| if [ "${EXPECTED}" == "${SUM}" ]; | |
| then | |
| echo RNG test success! | |
| true | |
| else | |
| echo RNG test failure! | |
| false | |
| fi | |
| - name: Launch JJ_SAXS instrument | |
| id: JJ_SAXS | |
| run: | | |
| set -e | |
| set -u | |
| set -x | |
| if [ "$RUNNER_OS" == "Windows" ]; | |
| then | |
| export SUFFIX=".bat --permissive" | |
| else | |
| export SUFFIX="" | |
| fi | |
| test -f ${CONDA_PREFIX}/bin/mcxtrace | |
| mcxtrace --version | |
| mxtest${SUFFIX} --instr=JJ_SAXS --testdir=run_singletests --suffix=${{ matrix.mpi }} | |
| mxtest${SUFFIX} --instr=JJ_SAXS --mpi=2 --testdir=run_singletests --suffix=${{ matrix.mpi }} | |
| - name: Launch ESRF_BM29 instrument | |
| id: ESRF_BM29 | |
| run: | | |
| set -e | |
| set -u | |
| set -x | |
| if [ "$RUNNER_OS" == "Windows" ]; | |
| then | |
| export SUFFIX=".bat" | |
| else | |
| export SUFFIX="" | |
| fi | |
| test -f ${CONDA_PREFIX}/bin/mcxtrace | |
| mcxtrace --version | |
| mxtest${SUFFIX} --instr=ESRF_BM29 --testdir=run_singletests --suffix=${{ matrix.mpi }} | |
| mxtest${SUFFIX} --instr=ESRF_BM29 --mpi=2 --testdir=run_singletests --suffix=${{ matrix.mpi }} | |
| - name: Launch MCPL test instrument | |
| id: mcpl-test | |
| run: | | |
| set -e | |
| set -u | |
| set -x | |
| if [ "$RUNNER_OS" == "Windows" ]; | |
| then | |
| export SUFFIX=".bat" | |
| else | |
| export SUFFIX="" | |
| fi | |
| test -f ${CONDA_PREFIX}/bin/mcxtrace | |
| mcxtrace --version | |
| mxtest${SUFFIX} --instr=Test_MCPL_input --testdir=run_singletests --suffix=${{ matrix.mpi }} | |
| mxtest${SUFFIX} --instr=Test_MCPL_output --testdir=run_singletests --suffix=${{ matrix.mpi }} | |
| mxtest${SUFFIX} --instr=Test_MCPL_input --mpi=2 --testdir=run_singletests --suffix=${{ matrix.mpi }} | |
| mxtest${SUFFIX} --instr=Test_MCPL_output --mpi=2 --testdir=run_singletests --suffix=${{ matrix.mpi }} | |
| - name: Launch Absorption test instrument | |
| id: Absorption-test | |
| run: | | |
| set -e | |
| set -u | |
| set -x | |
| if [ "$RUNNER_OS" == "Windows" ]; | |
| then | |
| export SUFFIX=".bat" | |
| else | |
| export SUFFIX="" | |
| fi | |
| test -f ${CONDA_PREFIX}/bin/mcxtrace | |
| mcxtrace --version | |
| mxtest${SUFFIX} --instr=Test_Absorption --testdir=run_singletests --suffix=${{ matrix.mpi }} | |
| mxtest${SUFFIX} --instr=Test_Absorption --mpi=2 --testdir=run_singletests --suffix=${{ matrix.mpi }} | |
| - name: Check for modified instruments | |
| id: instr-test | |
| run: | | |
| set -e | |
| set -u | |
| set -x | |
| export MCXTRACE_EXECUTABLE="mcxtrace" | |
| export MXRUN_EXECUTABLE="mxrun" | |
| export MXTEST_EXECUTABLE="mxtest" | |
| export PERMISSIVE=" " | |
| export PATH=${PATH}:${PWD}/install_mcxtrace/bin/:${PWD}/install_mcxtrace/mcxtrace/3.99.99/bin/ | |
| # Check if any instr files were modified during last commit | |
| cd src | |
| export CHANGEDCOMPS=`git diff --name-only HEAD HEAD~1| grep \.comp\$ | grep mcxtrace-comps | xargs -n1 basename | sed s/\.comp//g | xargs echo` | |
| export NUMCHANGEDCOMPS=`git diff --name-only HEAD HEAD~1|grep \.comp\$ | grep mcxtrace-comps | wc -l | xargs echo` | |
| cd - | |
| if [ "$NUMCHANGEDCOMPS" != "0" ]; | |
| then | |
| for comp in $CHANGEDCOMPS; | |
| do | |
| echo Finding tests including component $comp | |
| NUMMATCH=`find src/mcxtrace-comps -name \*.instr -exec grep -H ${comp} \{\} \; | cut -f1 -d: | sort | uniq | wc -l` | |
| if [ "$NUMMATCH" -gt "0" ]; | |
| then | |
| if [ "$RUNNER_OS" != "Windows" ]; then | |
| mxtest --mpi=2 --testdir run_${comp} --comp=${comp} --suffix=CHANGES_${{ matrix.mpi }} $PERMISSIVE --verbose | |
| else | |
| mxtest.bat --mpi=2 --testdir run_${comp} --comp=${comp} --suffix=CHANGES_${{ matrix.mpi }} $PERMISSIVE --verbose | |
| fi | |
| else | |
| echo No matching tests found | |
| fi | |
| done | |
| fi | |
| cd src | |
| export RUNALL="NO" | |
| export CHANGEDINSTR=`git diff --name-only HEAD HEAD~1| grep \.instr\$ | grep mcxtrace-comps | xargs -n1 basename | sed s/\.instr//g | xargs echo` | |
| export CHANGEDINSTR=`echo $CHANGEDINSTR | xargs -n1 echo | sort | uniq | xargs echo | sed s/\ /,/g` | |
| export NUMCHANGEDINSTR=`git diff --name-only HEAD HEAD~1|grep \.instr\$ | grep mcxtrace-comps | wc -l | xargs echo` | |
| echo ---- | |
| echo $NUMCHANGEDCOMPS components and $NUMCHANGEDINSTR instruments were changed, resulting in this list: | |
| echo $CHANGEDINSTR | |
| echo ---- | |
| cd - | |
| if [ "$NUMCHANGEDINSTR" -gt "20" ]; | |
| then | |
| export RUNALL="YES" | |
| fi | |
| if [ "$NUMCHANGEDINSTR" != "0" ]; | |
| then | |
| if [ "$RUNALL" == "NO" ]; | |
| then | |
| export SCOPE="--instr=$CHANGEDINSTR" | |
| else | |
| export SCOPE=" " | |
| fi | |
| mkdir run_mxtest && cd run_mxtest | |
| if [ "$RUNNER_OS" != "Windows" ]; then | |
| mxtest --mpi=2 --testdir $PWD $SCOPE --suffix=CHANGES_${{ matrix.mpi }} $PERMISSIVE | |
| mxviewtest --nobrowse $PWD | |
| else | |
| mxtest.bat --mpi=2 --testdir $PWD $SCOPE --suffix=CHANGES_${{ matrix.mpi }} $PERMISSIVE | |
| mxviewtest.bat --nobrowse $PWD | |
| fi | |
| fi | |
| - name: 'Tar output files' | |
| id: tar-package | |
| if: always() | |
| run: | | |
| set -e | |
| set -u | |
| set -x | |
| # Clear out binaries from sim dir and tar up artifact | |
| ls | grep run_ | xargs -n1 ./src/devel/bin/mccode-simdir-cleanfiles -d | |
| tar cvfz mcxtrace-${{ matrix.os }}.${{ matrix.mpi }}.python-${{ matrix.python }}_output.tgz run_* | |
| - name: 'Upload Artifact' | |
| id: tar-upload | |
| uses: actions/upload-artifact@v4 | |
| if: always() | |
| with: | |
| name: mcxtrace-artefacts-${{ matrix.os }}.${{ matrix.mpi }}.python-${{ matrix.python }} | |
| path: "mcxtrace-${{ matrix.os }}.${{ matrix.mpi }}.python-${{ matrix.python }}_output.tgz" | |
| - name: Setup tmate session for manual debugging | |
| uses: mxschmitt/action-tmate@v3 | |
| if: always() && (inputs.manual-debugging == true) | |
| with: | |
| limit-access-to-actor: true |