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NEWS.md

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fbar 0.6.0

  • Fix for new CRAN check for 'return' without '()'
  • Lots of changes to take into account changes in dependencies
  • Simplified installation documentation

fbar 0.5.2

  • Fix to getBiGG function
  • Fix to vignette

fbar 0.4.4

  • New function for retrieving models from BiGG
  • Changes to model data files
  • New data file to help specify exchange reactions
  • Changed some function argument defaults

fbar 0.3.4

  • Test updates and tidying to work with new version of ROI
  • New tests
  • Spelling corrections
  • Moving to assuming availability of ecos solver. All other solvers still supported

fbar 0.3.3

  • Spelling corrections

fbar 0.3.2

  • Minor updates for Cran release

fbar 0.3.1

  • Created website using pkgdown

fbar 0.3.0

  • Moved to new NSE framework

fbar 0.2.2

  • Deprecated expanded_to_gurobi, expanded_to_glpk and reactiontbl_to_gurobi. ROI will now be the only backend.

fbar 0.2.1

  • Updated and corrected some test code
  • Added test and fix for situation where metabolite is used multiple times in one reaction string
  • Small updates to vignettes and readme

fbar 0.2.0

  • Added new functions for metabolite parsing
  • Added more documentation

fbar 0.1.23

  • Added DONTRUN to some examples which take too long on some platforms

fbar 0.1.19

  • New vignette

fbar 0.1.18

  • variety of bug fixes

fbar 0.1.17

  • Started moving to using ROI.plugin.ecos for examples and tests, since it has no dependencies
  • New function to convert from an expanded model back to a reaction table
  • Fixed a bug in the total flux minimization code of find_fluxes_df

fbar 0.1.16

  • Changes to tests to reduce chatter further

fbar 0.1.15

  • Description changes to remove notes

fbar 0.1.14

  • Changed the title
  • Changed the description
  • Typo fixed

fbar 0.1.13

  • Checks and filters in tests, vignette and examples to remove implicit dependency on ROI.plugin.glpk.
  • Other pdates and improvements to documentation and examples.
  • Updated tests for cleaner output

fbar 0.1.12

  • Tweaks and updates for CRAN submission

fbar 0.1.9

  • Started using travis for integration

fbar 0.1.8

  • Test updates

fbar 0.1.1

  • Changed optimization framework - can now use one of a choice of optimizers
  • Lots more documentation
  • Name changes and refactoring