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Currently, split_csv is expected to work with a sub-config. Which is different from the overall nextflow design (split once - perform experiments after).
Currently, split_csv is expected to work with a sub-config. Which is different from the overall nextflow design (split once - perform experiments after).
Two possibilities :
implement sub-splits, would look like this :
full_yaml -> yaml_with_split_1 ; yaml_with_split_2
yaml_with_split_1 -> subconfigs
yaml_with_split_2 -> subconfigs (pipeline ran twice)
re-run split with every sub-config (could be expensive).
Only allow one split option
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