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CONTRIBUTING.md

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Contributing

Contributions are welcome, and they are greatly appreciated! Every little bit helps, and credit will always be given.

Environment setup

Nothing easier!

Fork and clone the repository, then:

cd stimulus-py
make setup

NOTE: If it fails for some reason, you'll need to install uv manually.

You can install it with:

curl -LsSf https://astral.sh/uv/install.sh | sh

Now you can try running make setup again, or simply uv sync.

You now have the dependencies installed.

Run make help to see all the available actions!

Tasks

The entry-point to run commands and tasks is the make Python script, located in the scripts directory. Try running make to show the available commands and tasks. The commands do not need the Python dependencies to be installed, while the tasks do. The cross-platform tasks are written in Python, thanks to duty.

If you work in VSCode, we provide an action to configure VSCode for the project.

Development

As usual:

  1. create a new branch: git switch -c feature-or-bugfix-name
  2. edit the code and/or the documentation

Before committing:

  1. run make format to auto-format the code
  2. run make check to check everything (fix any warning)
  3. run make test to run the tests (fix any issue)
  4. if you updated the documentation or the project dependencies:
    1. run make docs
    2. go to http://localhost:8000 and check that everything looks good

Then you can pull request and we will review. Make sure you join our slack hosted on nf-core to talk and build with us!