diff --git a/.pydevproject b/.pydevproject
index 23ffe591d..61bc1ae0b 100644
--- a/.pydevproject
+++ b/.pydevproject
@@ -1,9 +1,9 @@
 <?xml version="1.0" encoding="UTF-8" standalone="no"?>
 <?eclipse-pydev version="1.0"?><pydev_project>
-<pydev_pathproperty name="org.python.pydev.PROJECT_SOURCE_PATH">
-<path>/${PROJECT_DIR_NAME}/scripts</path>
-<path>/${PROJECT_DIR_NAME}/pyemma</path>
-</pydev_pathproperty>
+
 <pydev_property name="org.python.pydev.PYTHON_PROJECT_VERSION">python 2.7</pydev_property>
 <pydev_property name="org.python.pydev.PYTHON_PROJECT_INTERPRETER">Default</pydev_property>
+<pydev_pathproperty name="org.python.pydev.PROJECT_SOURCE_PATH">
+<path>/${PROJECT_DIR_NAME}</path>
+</pydev_pathproperty>
 </pydev_project>