From 28d0027ec4594d50ad80caf3cac713f6a4a976a0 Mon Sep 17 00:00:00 2001 From: "Martin K. Scherer" Date: Fri, 6 Jan 2017 17:50:07 +0100 Subject: [PATCH] [changelog] added github references --- doc/source/CHANGELOG.rst | 25 ++++++++++--------------- 1 file changed, 10 insertions(+), 15 deletions(-) diff --git a/doc/source/CHANGELOG.rst b/doc/source/CHANGELOG.rst index cc4b87da8..e65e07826 100644 --- a/doc/source/CHANGELOG.rst +++ b/doc/source/CHANGELOG.rst @@ -1,8 +1,8 @@ Changelog ========= -2.3 (tba) ---------- +2.3 (6-1-2017) +-------------- **New features**: @@ -11,19 +11,22 @@ Changelog or "koopman", which uses the re-weighting procedure from [1] to compute equi- librium covariance matrices. The user can also supply his own re-weighting me- thod. This must be an object that possesses a function weights(X), that assigns - a weight to every time-step in a trajectory X. + a weight to every time-step in a trajectory X. #1007 - covariance_lagged: This new method can be used to compute covariance matrices and time-lagged covariance matrices between time-series. It is also possible to use the re-weighting method from [1] to compute covariance matrices in equi- librium. This can be triggered by the option "weights", which has the same spe- - cifications as in tica. + cifications as in tica. #1007 - msm: - estimate_markov_model: New option "weights". Can be empirical, which does the same as before, or "oom", which triggers a transition matrix estimator based on OOM theory to compute an equilibrium transition matrix from possibly non- - equilibrium data. See Ref. [2] for details. - - timescales_msm: The same change as in estimate_markov_model. + equilibrium data. See Ref. [2] for details. #1012, #1016 + - timescales_msm: The same change as in estimate_markov_model. #1012, #1016 + - TPT: if user provided sets A and B do not overlap (no need to split), preserve order of user states. #1005 + +- general: Added an automatic check for new releases upon import. #986 - References: [1] Wu, H., Nueske, F., Paul, F., Klus, S., Koltai, P., and Noe, F. 2017. Bias reduced variational @@ -34,21 +37,13 @@ Changelog (submitted). -- msm: - - ... - - TPT: if user provided sets A and B do not overlap (no need to split), preserve order of user states. #1005 - -- general: Added an automatic check for new releases upon import. #986 - **Fixes**: - coordinates: - - ... - kmeans: fixed a rare bug, which led to a segfault, if NaN is contained in input data. #1010 - Featurizer: fix reshaping of AnglesFeature. #1018. Thanks @RobertArbon -- plots: - - Fix drawing into existing figures for network plots. #1020 +- plots: Fix drawing into existing figures for network plots. #1020 2.2.7 (10-21-16)