diff --git a/doc/source/ipython.rst b/doc/source/ipython.rst
index 7572379cf..2431470b7 100644
--- a/doc/source/ipython.rst
+++ b/doc/source/ipython.rst
@@ -18,9 +18,7 @@ Application walkthroughs
    :maxdepth: 1
 
    generated/pentapeptide_msm
-
    generated/MSM_BPTI
-
    generated/trypsin_benzamidine_hmm
 
 
@@ -44,9 +42,15 @@ In this section we will give you in-depth tutorials on specific methods or conce
    :maxdepth: 1
 
    generated/feature_selection
-
    generated/model_selection_validation
-
    generated/tpt
 
 
+Estimation with fixed equilibrium distribution
+----------------------------------------------
+
+.. toctree::
+   :maxdepth: 1
+
+   generated/doublewell
+   generated/alanine
diff --git a/pyemma-ipython b/pyemma-ipython
index dca0b4e55..90328fca8 160000
--- a/pyemma-ipython
+++ b/pyemma-ipython
@@ -1 +1 @@
-Subproject commit dca0b4e55c8b85d7cf0889965e0f4df40c69aa8e
+Subproject commit 90328fca82b15c755ea238a4de9136c00179887c