NEWS

CHANGES IN 1.29.1
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    * Suggest 'markdown' package in DESCRIPTION

CHANGES IN 1.19.1
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    * Dropped rSFFreader dependency

CHANGES IN 1.9.3
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    * Namespace fixes for base R packages to alleviate build errors
    * Updated findOverlap calls to use the new drop.self & drop.redundant args
    
CHANGES IN 1.9.1
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    * Using readxl to import sampleInfo excel file
    * Minor code improvements for merging internal objects and cleaning data
    * Removed parameter interactive in read.SeqFolder in favor of base::interactive()
    * findOverlap calls updated to use ignoreRedundant & ignoreSelf
    * splitSeqsToFiles receives outDir parameter

CHANGES IN 1.4.0
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    * Using dplyr for small computations

CHANGES IN 1.1.3
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  * Modified all bplapply calls
  * Moved BiocGenerics and rSFFreader to Imports

CHANGES IN 0.99.0
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  * Added examples for almost all functions
  * Removed Subread support

CHANGES IN 0.3.35
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  * Added annotateSites

CHANGES IN 0.3.34
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  * Bug fix dereplicateReads & write.psl