From 3271dfa1b441fcfe2ed9aad83888b78922aba91e Mon Sep 17 00:00:00 2001 From: kairukuma <11655351+kairukuma@users.noreply.github.com> Date: Mon, 8 Apr 2024 10:08:32 -0400 Subject: [PATCH] Update README.md --- README.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 8a25fab..90bf094 100644 --- a/README.md +++ b/README.md @@ -43,7 +43,7 @@ Systems without a CUDA-capable GPU can also install scGHOST using the same depen scGHOST can use up to 40 GB of memory for a single-cell dataset of 4,238 cells. Considering operating system overhead, we recommend running scGHOST on a machine with at least 64 GB of memory to avoid poor performance or out-of-memory errors at runtime. -scGHOST was developed on a system with a 12-core 12th generation Intel CPU, an Nvidia RTX 3090 GPU with 24GB of VRAM, and 64GB of system memory. With GPU caching enabled, scGHOST uses a maximum of 15 GB of VRAM on the PFC dataset. With GPU caching disabled, VRAM becomes less of a limiting factor and scGHOST should run on any CUDA-capable GPU. +scGHOST was developed on a system with a 12-core 12th generation Intel CPU, an Nvidia RTX 3090 GPU with 24GB of VRAM, and 64GB of system memory. With GPU caching enabled, scGHOST uses a maximum of 15 GB of VRAM on the PFC dataset. With GPU caching disabled, VRAM becomes less of a limiting factor and scGHOST should run on any CUDA-capable GPU with at least 4 GB of VRAM. ## Usage @@ -93,4 +93,4 @@ Please follow our tutorial notebooks in the root directory for examples on how t `python scghost.py --config sample_configs/config_wtc.json` ## Contact -Please email jianma@cs.cmu.edu or raise an issue in the github repository with any questions about installation or usage. +Please email jianma@cs.cmu.edu or raise an issue in the github repository with any questions about installation or usage or any encountered bugs.