Ready for v0.6.2

Author: MatthewThe

.github/workflows/publish_release.yml

@@ -38,7 +38,7 @@ jobs:
         overwrite: false
         file_glob: true
     - name: Upload artifacts
-      uses: actions/upload-artifact@v3
+      uses: actions/upload-artifact@v4
       with:
         name: ${{ matrix.os }}-py${{ matrix.python-version }}
         path: "dist/*.whl"
@@ -51,7 +51,7 @@ jobs:
 
     steps:
     - name: Download artifacts
-      uses: actions/download-artifact@v3
+      uses: actions/download-artifact@v4
     - run : |
         ls -R
         mv -v */*.whl .

CHANGELOG

@@ -1,3 +1,12 @@
+v0.6.2
+- Update job-pool to v0.3.0
+- Added scaffold for readthedocs documentation
+- Cleaned up test_maxquant.py and test_utils.py; added test for fill_missing_min_max_scans
+- Added fill_missing_min_max_scans function for allpeptides.txt
+- Fixed statistics output if skip_evidence == True
+- Proper type hinting and some more docstrings
+- Added missing parameters to docstrings
+
 v0.6.1
 - Fix missing tmt_ms_level argument for tmt_requantify
 

pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "simsi_transfer"
-version = "0.6.1"
+version = "0.6.2"
 description = "Software-assisted reduction of missing values in phosphoproteomics and proteomics isobaric labeling data using MS2 spectrum clustering"
 authors = ["Firas Hamood <firas.hamood@tum.de>", "Matthew The <matthew.the@tum.de>"]
 license= "Apache-2.0"